Fixes other stuff

cvxgrp · Dec 3, 2024 · 0f4702a · 0f4702a
1 parent 02ef295
commit 0f4702a
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/utils/cleanup_adelie_data.py b/utils/cleanup_adelie_data.py
@@ -44,7 +44,7 @@
 geno_out_chr = np.asfortranarray(geno_out_chr.T)
 
 # define cache directory and snpdat filename
-cache_dir = "/scratch/candes/for_parth/tmp"
+cache_dir = "/scratch/groups/candes/parth"
 
 chromosomes = df_bim["chr"].unique()
 

diff --git a/utils/sherlock_script.py b/utils/sherlock_script.py
@@ -10,7 +10,7 @@
     raise RuntimeError()
 
 data_dir = "/oak/stanford/groups/candes/for_parth"
-cache_dir = "/scratch/candes/for_parth"
+cache_dir = "/scratch/groups/candes/parth"
 df = pd.read_csv(os.path.join(data_dir, "phenotypes.QC.britishonly.csv"), index_col=0)
 covars_dense = df.loc[:, df.columns != 'height'].to_numpy()
 y = df['height'].to_numpy()