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Releases: cytomine/Cytomine-community-edition

Cytomine Community Edition 2023.1

08 Jan 15:06
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Release of Cytomine Community Edition version 2023.1 of the Cytomine platform.

You can find instructions on how to install Cytomine CE2023.1 and how to use Cytomine 2023.1 on our official online documentation documentation.cytomine.org.

The CE2023.1 version is a huge collaborative work of all our team and our contributors, and mainly the Cytomine team of the University of Liège.

List of modifications

  • New way to install Cytomine: No more bash scripts: CE2023.1 have now an installer based on Docker compose.
  • Architectural changes: CORE component has been moved from Grails to Spring Boot, and Image Management Server has been moved from Grails to Python.
  • New way to manage data and images: All data and whole-slide images are now stored inside docker volumes.
  • New versioning: To differentiate from older versions using Grails, new versions of Cytomine Community Edition will now use a version that mentions the year of their release. This version being the first release of year 2023, it is called Cytomine Community Edition 2023.1.
  • New feature: Cytomine now support WSI DICOM format.
  • New feature: Cytomine now support Z-stacks for OME-TIFF images.
  • New feature: Cytomine now support multichannel images in OME-TIFF format.

DISCLAIMERS

  • This version opens a new way to manage data within Cytomine. It is recommended for new projects starting from scratch, but NOT TO UPGRADE projects already running any Legacy edition of Cytomine (version 2 or 3). Please contact us if you have such needs.
  • This version do not include any AI engine for the moment. This will be added in next release. So if you need to run AI within your Cytomine, please consider the last release of the Legacy edition of Cytomine.

Acknowledgements

The Cytomine Cooperative
The Cytomine Corporation SA
The Cytomine research team at Montefiore Institute (ULiège University)

Microservices versions

Component Version
bioformat v1.2.0
core 4.4.0
mongo 0.1.0
nginx 2.0.0
redis 7.0.8
pims-ce-package 0.2.0
postgis 1.3.0
rabbitmq 3.10
web_ui 2.6.2