increased length of genome standardization, updated bbuploader cli

databio · Nov 19, 2024 · 6f69bdf · 6f69bdf
1 parent f674080
commit 6f69bdf
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/bedboss/bbuploader/cli.py b/bedboss/bbuploader/cli.py
@@ -44,7 +44,7 @@ def upload_all(
         False, help="Overwrite existing bedfiles. [Default: False]"
     ),
     overwrite_bedset: bool = typer.Option(
-        False, help="Overwrite existing bedset. [Default: False]"
+        True, help="Overwrite existing bedset. [Default: False]"
     ),
     rerun: bool = typer.Option(False, help="Re-run all the samples. [Default: False]"),
     run_skipped: bool = typer.Option(

diff --git a/bedboss/utils.py b/bedboss/utils.py
@@ -24,7 +24,7 @@ def standardize_genome_name(input_genome: str, bedfile: str = None) -> str:
     :param bedfile: path to bed file
     :return: genome name string
     """
-    if not input_genome or len(input_genome) > 8:
+    if not input_genome or len(input_genome) > 10:
         if bedfile:
             predictor = ReferenceValidator()
             return predictor.predict(bedfile) or ""