dump dict to json string for pephub reporting

databio · Sep 9, 2024 · d2697d1 · d2697d1
1 parent ad98d8e
commit d2697d1
Showing 1 changed file with 6 additions and 1 deletion.
diff --git a/scripts/ref_genome_validating/validate_genome.py b/scripts/ref_genome_validating/validate_genome.py
@@ -92,9 +92,14 @@ def main():
                     for key, values in i.items():
                         all_vals.update({key: values})
 
-        psm.report(record_identifier=rid, values=all_vals)
+        # Report to file backend
         psm2.report(record_identifier=rid, values=all_vals)
 
+        # Convert to json string before reporting to pephub
+        for key, value in all_vals.items():
+            all_vals[key] = str(json.dumps(value))
+        psm.report(record_identifier=rid, values=all_vals)
+
     return