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Release v0.1.0 #21

Merged

khoroshevskyi merged 91 commits into main from dev

Feb 29, 2024

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khoroshevskyi commented Oct 19, 2023 •

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add documentation for bedbuncher and qudrant

khoroshevskyi and others added 22 commits

October 5, 2023 23:06


          fixed typos, requirements and tests

3f5894b


          Fixed incorrect md5sum of bed files

9665ac8


          Fixed #19

909153a


          ignore test outputs

e39ac62


          simplify test docker instructions

4d27112


          remove dockerfile (not needed)

bd0cdf4


          Fixed tests and updated bed hashing

a00c5b7


          Fixed #20

b086146


          Fixed errors in pipeline due to bbclient and qdrant update

6af326a


          1. Fixed bedbuncher and bedstut

ad61770

2. Added uploading with pep


          Fixed insert cli

fb99493


          Updated initiation of bbconf object (initiaded once for insert option)

8c4e6bf


          Unified pipeline Manager

3c8db2f


          added s3 uploading

c2fb40d


          fixed bedbuncher bbc

358b89c


          updated dependencies

694296b


          pipeline manager improvments

f5b82f4


          fixed #25


          narrowpeak spec fix

9e2c7e6


          Added uploading to s3 to bedstat

92eac34


          Updated documentation

fa401e9


          Updated requirements

af8a6d5

khoroshevskyi requested a review from donaldcampbelljr

January 2, 2024 19:31

khoroshevskyi marked this pull request as ready for review

January 2, 2024 19:31

donaldcampbelljr reviewed

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          Update README.md

edfe947

Correct typos

donaldcampbelljr reviewed

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donaldcampbelljr reviewed

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khoroshevskyi and others added 29 commits

February 16, 2024 21:59


          Fixed #30

3b3eab1


          add more logic for catching narrowpeak and broadpeak files that are n…

4fcdec9

…ot named as such #34


          Add simple tests #34

3af5298


          Use all, fix column out of range error #34

c43f589


          Fixed bedmaker bed format

71f5ebf


          Merge pull request #39 from databio/dev_update_bed_classifier

696e3a0

Update bed classifier


          Fixed bedmaker bed format

57bc897


          moved uploading to db from stats to bedboss

5ce2165


          fixed tests

c5b83b7


          updated models

49d0b89


          updated metadata model

331a2b1


          updated phc logger

ffa08e9


          Merge pull request #40 from databio/restructuring

3dbd1db

Restructuring


          Fixed #41

9a6e275


          Fixed #42

d391a12


          Fixed #32

8c56f33


          fixed bedsets

c4c75ad


          fixed bedsets 2

6506df2


          added requirement test to cli

96ca0a8


          Merge pull request #44 from databio/restructuring

884d99b

Restructuring


          updated docs

9d65413


          Merge branch 'restructuring' into dev

2e13d12


          updated docs

12943b9


          Updated usage

a6b9b18


          Updated README

884aa9f


          Updated README

bd0741b


          Updated README

f412c9b


          Updated installation

ccd6503


          Updated requirements

23df69d

khoroshevskyi merged commit f76790c into main

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