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Ref validator refactoring #77

Merged
merged 14 commits into from
Sep 19, 2024
Merged

Ref validator refactoring #77

merged 14 commits into from
Sep 19, 2024

Commits on Sep 16, 2024

  1. refactoring

    @khoroshevskyi
    khoroshevskyi committed Sep 16, 2024
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Commits on Sep 17, 2024

  1. added concise to ref gen validator return

    @khoroshevskyi
    khoroshevskyi committed Sep 17, 2024
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  2. added better opening of the bed file

    @khoroshevskyi
    khoroshevskyi committed Sep 17, 2024
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  3. fix stats scripts after refactor

    @donaldcampbelljr
    donaldcampbelljr committed Sep 17, 2024
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  4. fix row skipping during file opening

    @donaldcampbelljr
    donaldcampbelljr committed Sep 17, 2024
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  5. fix logic for q_and_not_m > 0:

    @donaldcampbelljr
    donaldcampbelljr committed Sep 17, 2024
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  6. add mm39 to stats comparison

    @donaldcampbelljr
    donaldcampbelljr committed Sep 17, 2024
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  7. fix geotfetch portion of validator script

    @donaldcampbelljr
    donaldcampbelljr committed Sep 17, 2024
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  8. add bedfile read exception

    @donaldcampbelljr
    donaldcampbelljr committed Sep 17, 2024
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  9. add valueerror exception

    @donaldcampbelljr
    donaldcampbelljr committed Sep 17, 2024
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Commits on Sep 18, 2024

  1. moved opening bed file to geniml

    @khoroshevskyi
    khoroshevskyi committed Sep 18, 2024
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  2. fix refactoring to main from refgenomevalidator.py

    @donaldcampbelljr
    donaldcampbelljr committed Sep 18, 2024
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Commits on Sep 19, 2024

  1. cleaning docstrings

    @khoroshevskyi
    khoroshevskyi committed Sep 19, 2024
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  2. version and typos

    @khoroshevskyi
    khoroshevskyi committed Sep 19, 2024
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