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This pull request includes several changes to the
bedboss
project, focusing on adding a "light mode" option to various functions, updating version numbers, and optimizing imports. The most important changes are summarized below:Version Update:
bedboss/_version.py
from "0.5.1" to "0.6.0".Light Mode Addition:
light
option to theupload_all
andupload_gse
functions inbedboss/bbuploader/cli.py
andbedboss/bbuploader/main.py
, including passing this parameter through various related functions.run_all
andinsert_pep
functions inbedboss/bedboss.py
to include thelight
parameter and anupdate
parameter for database record updates.Code Optimization:
bedboss/bbuploader/main.py
.calculate_time
decorator to several functions inbedboss/bbuploader/main.py
andbedboss/bedboss.py
to measure execution time.Added reprocess: