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Added partial processing #87

Merged
merged 8 commits into from
Dec 19, 2024
Merged

Added partial processing #87

merged 8 commits into from
Dec 19, 2024

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khoroshevskyi
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This pull request includes several changes to the bedboss project, focusing on adding a "light mode" option to various functions, updating version numbers, and optimizing imports. The most important changes are summarized below:

Version Update:

  • Updated the version number in bedboss/_version.py from "0.5.1" to "0.6.0".

Light Mode Addition:

  • Added a light option to the upload_all and upload_gse functions in bedboss/bbuploader/cli.py and bedboss/bbuploader/main.py, including passing this parameter through various related functions.
  • Enhanced the run_all and insert_pep functions in bedboss/bedboss.py to include the light parameter and an update parameter for database record updates.

Code Optimization:

  • Removed an unused import from bedboss/bbuploader/main.py.
  • Added the calculate_time decorator to several functions in bedboss/bbuploader/main.py and bedboss/bedboss.py to measure execution time.

Added reprocess:

  • Added rerun functions for one/all bed files + bedsets

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@donaldcampbelljr donaldcampbelljr left a comment

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Minor comments. Really good to see this functionality finally being added.

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@khoroshevskyi khoroshevskyi merged commit a75b987 into dev Dec 19, 2024
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2 participants