Merge branch 'refactor' of github.com:databio/bedhost into refactor

databio · Sep 3, 2023 · b7d9fd0 · b7d9fd0
2 parents 34863a6 + 2da9df2
commit b7d9fd0
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Showing 5 changed files with 25 additions and 11 deletions.
diff --git a/README.md b/README.md
@@ -102,3 +102,8 @@ For development, you can now also run it with `uvicorn`, which gives you auto-re
 source ../bedboss/environment/production.env
 BEDBASE_CONFIG=../bedbase.org/config/bedbase.yaml uvicorn bedhost.main:app --reload
 ```
+
+Using a local config:
+
+BEDBASE_CONFIG=../bbconf/tests/data/config.yaml uvicorn bedhost.main:app --reload
+
diff --git a/bedhost/_version.py b/bedhost/_version.py
@@ -1 +1 @@
-__version__ = "0.1.2"
+__version__ = "0.2.0-dev"
diff --git a/bedhost/main.py b/bedhost/main.py
@@ -24,13 +24,7 @@
 # uncomment below for development, to allow cross origin resource sharing
 app.add_middleware(
     CORSMiddleware,
-    allow_origins=[
-        "http://localhost:3000",
-        "http://localhost:8000",
-        "http://dev1.bedbase.org",
-        "http://data.bedbase.org",
-        "http://bedbase.org",
-    ],
+    allow_origins=["*"],
     allow_credentials=True,
     allow_methods=["*"],
     allow_headers=["*"],

diff --git a/bedhost/routers/api.py b/bedhost/routers/api.py
@@ -279,6 +279,13 @@ async def get_image_for_bedfile(
     return serve_file(path, remote)
 
 
+@router.get("/search/{query}")
+async def text_to_bed_search(
+    query: str = Query(..., description="Search query string")
+):
+    return bbc.t2bsi.nl_search(query)
+
+
 @router.get("/bed/{md5sum}/img_path/{id}")
 async def get_image_path_for_bedfile(
     md5sum: str = bd,

diff --git a/docs/changelog.md b/docs/changelog.md
@@ -2,13 +2,21 @@
 
 This project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html) and [Keep a Changelog](https://keepachangelog.com/en/1.0.0/) format. 
 
-## [0.1.2] -- 2023-2-6
+## [0.2.0] -- Unreleased
+- remove all graphql
+- remove local static hosting of UI
+- update to new pipestat-based bbconf (pending)
+
+## [0.1.3] -- 2023-09-0
+- allow all origins
+
+## [0.1.2] -- 2023-02-06
 ### change
--   change `/bedset/my_bedset/file_paths`endpoint from GET to POST
+- change `/bedset/my_bedset/file_paths`endpoint from GET to POST
 
 ## [0.1.1] -- 2021-10-30
 ### change
--   `/bed/genomes` and `bedset/genomes`: impove speed
+- `/bed/genomes` and `bedset/genomes`: impove speed
 
 ## [0.1.0] -- 2021-10-25
 ### add