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oops #80

Merged
merged 76 commits into from
Oct 27, 2023
Merged

oops #80

merged 76 commits into from
Oct 27, 2023

Commits on Aug 31, 2023

  1. start refactor: 

    - remove graphql stuff
- start to adopt new bbconf
- start new way to run with uvicorn for dev
    @nsheff
    nsheff committed Aug 31, 2023
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Commits on Sep 1, 2023

  1. add refactor info, index file

    @nsheff
    nsheff committed Sep 1, 2023
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  2. remove extra view pages

    @nsheff
    nsheff committed Sep 1, 2023
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  3. remove api subfolder

    @nsheff
    nsheff committed Sep 1, 2023
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  4. typo

    @nsheff
    nsheff committed Sep 1, 2023
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  5. add skeleton for search interface

    @nsheff
    nsheff committed Sep 1, 2023
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  6. Merge branch 'master' into refactor

    @nsheff
    nsheff committed Sep 1, 2023
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  7. Merge branch 'master' into refactor

    @nsheff
    nsheff committed Sep 1, 2023
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  8. version changelog bump for 0.2

    @nsheff
    nsheff committed Sep 1, 2023
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  9. add info on alternative config

    @nsheff
    nsheff committed Sep 1, 2023
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  10. downgrade pipestat and bbconf

    @xuebingjie1990
    xuebingjie1990 authored Sep 1, 2023
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Commits on Sep 3, 2023

  1. start to work toward using new bbconf

    @nsheff
    nsheff committed Sep 3, 2023
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  2. Merge branch 'refactor' of github.com:databio/bedhost into refactor

    @nsheff
    nsheff committed Sep 3, 2023
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  3. add new db

    @nsheff
    nsheff committed Sep 3, 2023
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  4. find right schema. Fix #70

    @nsheff
    nsheff committed Sep 3, 2023
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  5. comment on #70

    @nsheff
    nsheff committed Sep 3, 2023
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Commits on Sep 5, 2023

  1. some terminology cleanup

    @nsheff
    nsheff committed Sep 5, 2023
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  2. add example md5sum

    @nsheff
    nsheff committed Sep 5, 2023
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  3. remove serve_columns_for_table

    @nsheff
    nsheff committed Sep 5, 2023
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  4. start refactoring some endpoints

    @nsheff
    nsheff committed Sep 5, 2023
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  5. don't expect ui path on serve anymore

    @nsheff
    nsheff committed Sep 5, 2023
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  6. continued refactoring...

    @nsheff
    nsheff committed Sep 5, 2023
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Commits on Sep 6, 2023

  1. restructuring and simplification

    @nsheff
    nsheff committed Sep 6, 2023
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  2. lint

    @nsheff
    nsheff committed Sep 6, 2023
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  3. halfway through major restructure

    @nsheff
    nsheff committed Sep 6, 2023
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  4. more simplifying and restructuring

    @nsheff
    nsheff committed Sep 6, 2023
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  5. remove 2to3

    @nsheff
    nsheff committed Sep 6, 2023
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  6. ignore builds

    @nsheff
    nsheff committed Sep 6, 2023
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  7. remove unused function

    @nsheff
    nsheff committed Sep 6, 2023
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  8. restructure for cli and uvicorn use

    @nsheff
    nsheff committed Sep 6, 2023
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  9. lint

    @nsheff
    nsheff committed Sep 6, 2023
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Commits on Sep 9, 2023

  1. search works!

    @nsheff
    nsheff committed Sep 9, 2023
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Commits on Sep 10, 2023

  1. more progress on new backend

    @nsheff
    nsheff committed Sep 10, 2023
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Commits on Sep 13, 2023

  1. handle schema endpoint; some hacks for sample_name

    @nsheff
    nsheff committed Sep 13, 2023
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  2. update search return vals

    @nsheff
    nsheff committed Sep 13, 2023
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  3. remove Query for upgraded fastapi

    @nsheff
    nsheff committed Sep 13, 2023
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Commits on Oct 5, 2023

  1. refactoring..

    @khoroshevskyi
    khoroshevskyi committed Oct 5, 2023
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Commits on Oct 6, 2023

  1. more cleaning

    @khoroshevskyi
    khoroshevskyi committed Oct 6, 2023
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Commits on Oct 9, 2023

  1. removed http exceptions from helpers

    @khoroshevskyi
    khoroshevskyi committed Oct 9, 2023
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  2. fixed bed metadata endpoint

    @khoroshevskyi
    khoroshevskyi committed Oct 9, 2023
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  3. fixed all bed endpoints

    @khoroshevskyi
    khoroshevskyi committed Oct 9, 2023
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Commits on Oct 11, 2023

  1. cleaning main and dependencies

    @khoroshevskyi
    khoroshevskyi committed Oct 11, 2023
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Commits on Oct 14, 2023

  1. remove get_first_env_var for yacman update

    @nsheff
    nsheff committed Oct 14, 2023
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  2. fix example endpoints, add list endpoints

    @nsheff
    nsheff committed Oct 14, 2023
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  3. implement item list paging; allow extraneous qdrant results

    @nsheff
    nsheff committed Oct 14, 2023
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Commits on Oct 16, 2023

  1. fixing code mentioned in the comments PR

    @khoroshevskyi
    khoroshevskyi committed Oct 16, 2023
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  2. fixing code mentioned in the comments PR 2

    @khoroshevskyi
    khoroshevskyi committed Oct 16, 2023
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  3. Merge branch 'refactor' into alex_cleaning

    @khoroshevskyi
    khoroshevskyi authored Oct 16, 2023
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  4. fixing code mentioned in the comments PR 3

    @khoroshevskyi
    khoroshevskyi committed Oct 16, 2023
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  5. Merge remote-tracking branch 'origin/alex_cleaning' into alex_cleaning

    @khoroshevskyi
    khoroshevskyi committed Oct 16, 2023
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  6. fixing code mentioned in the comments PR 4

    @khoroshevskyi
    khoroshevskyi committed Oct 16, 2023
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Commits on Oct 17, 2023

  1. Merge pull request #76 from databio/alex_cleaning 

    Alex cleaning
    @nsheff
    nsheff authored Oct 17, 2023
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  2. remove deprecated yacman util

    @nsheff
    nsheff committed Oct 17, 2023
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  3. Merge branch 'refactor' of github.com:databio/bedhost into refactor

    @nsheff
    nsheff committed Oct 17, 2023
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  4. lint

    @nsheff
    nsheff committed Oct 17, 2023
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  5. changelog

    @nsheff
    nsheff committed Oct 17, 2023
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  6. Clarify readme

    @nsheff
    nsheff committed Oct 17, 2023
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  7. version bump

    @nsheff
    nsheff committed Oct 17, 2023
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  8. Merge branch 'master' into refactor

    @nsheff
    nsheff authored Oct 17, 2023
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  9. Merge branch 'refactor' of github.com:databio/bedhost into refactor

    @nsheff
    nsheff committed Oct 17, 2023
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  10. yacman update merge

    @nsheff
    nsheff committed Oct 17, 2023
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  11. remove config file

    @nsheff
    nsheff committed Oct 17, 2023
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  12. clean up config handling

    @nsheff
    nsheff committed Oct 17, 2023
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  13. bring back search fix

    @nsheff
    nsheff committed Oct 17, 2023
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  14. clean up imports and routers

    @nsheff
    nsheff committed Oct 17, 2023
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  15. remove api prefix

    @nsheff
    nsheff committed Oct 17, 2023
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  16. bring back versions and all endpoints that were removed for some reason

    @nsheff
    nsheff committed Oct 17, 2023
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Commits on Oct 19, 2023

  1. clarify message

    @nsheff
    nsheff committed Oct 19, 2023
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  2. fix versions

    @nsheff
    nsheff committed Oct 19, 2023
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  3. remove dobule bedset in endpoints

    @nsheff
    nsheff committed Oct 19, 2023
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  4. Update README.md

    @nsheff
    nsheff authored Oct 19, 2023
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  5. rm renaming "name" to "sample_name"

    @xuebingjie1990
    xuebingjie1990 committed Oct 19, 2023
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Commits on Oct 20, 2023

  1. lint

    @nsheff
    nsheff committed Oct 20, 2023
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  2. remove old comments

    @nsheff
    nsheff committed Oct 20, 2023
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  3. only lint on PR

    @nsheff
    nsheff committed Oct 20, 2023
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  4. Merge pull request #77 from databio/refactor 

    Refactor for release 0.2
    @nsheff
    nsheff authored Oct 20, 2023
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