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bug fixes
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@smitdave
smitdave committed Dec 19, 2023
1 parent 48fcd32 commit 711cb4d
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Showing 7 changed files with 363 additions and 76 deletions.
2 changes: 1 addition & 1 deletion R/MYZmod-RMG.R
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Expand Up @@ -23,7 +23,7 @@ MBionomics.RMG <- function(t, y, pars) {
#' @return a [numeric] vector of length `nPatches`
#' @export
F_fqZ.RMG <- function(t, y, pars) {
with(pars$MYZpar, f*q)*y[pars$MYZpar$Z_ix]
with(pars$MYZpar, f*q)*y[pars$ix$MYZ$Z_ix]
}

#' @title Number of eggs laid by adult mosquitoes
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339 changes: 275 additions & 64 deletions docs/articles/X-How_To_Add_Model.html
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45 changes: 36 additions & 9 deletions docs/articles/Xmod-SIS.html
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2 changes: 1 addition & 1 deletion docs/pkgdown.yml
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Expand Up @@ -4,7 +4,7 @@ pkgdown_sha: ~
articles:
X-How_To_Add_Model: X-How_To_Add_Model.html
Xmod-SIS: Xmod-SIS.html
last_built: 2023-12-19T14:44Z
last_built: 2023-12-19T16:21Z
urls:
reference: https://dd-harp.github.io/mobwork/reference
article: https://dd-harp.github.io/mobwork/articles
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4 changes: 4 additions & 0 deletions docs/reference/make_Xpar_SEIR.html
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2 changes: 1 addition & 1 deletion docs/search.json
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45 changes: 45 additions & 0 deletions docs/sitemap.xml
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Expand Up @@ -18,12 +18,18 @@
<url>
<loc>https://dd-harp.github.io/mobwork/index.html</loc>
</url>
<url>
<loc>https://dd-harp.github.io/mobwork/reference/F_X.SEIR.html</loc>
</url>
<url>
<loc>https://dd-harp.github.io/mobwork/reference/F_X.SIR.html</loc>
</url>
<url>
<loc>https://dd-harp.github.io/mobwork/reference/F_X.garki.html</loc>
</url>
<url>
<loc>https://dd-harp.github.io/mobwork/reference/F_b.SEIR.html</loc>
</url>
<url>
<loc>https://dd-harp.github.io/mobwork/reference/F_b.SIR.html</loc>
</url>
Expand All @@ -36,12 +42,18 @@
<url>
<loc>https://dd-harp.github.io/mobwork/reference/F_fqZ.RMG.html</loc>
</url>
<url>
<loc>https://dd-harp.github.io/mobwork/reference/F_pr.SEIR.html</loc>
</url>
<url>
<loc>https://dd-harp.github.io/mobwork/reference/F_pr.SIR.html</loc>
</url>
<url>
<loc>https://dd-harp.github.io/mobwork/reference/F_pr.garki.html</loc>
</url>
<url>
<loc>https://dd-harp.github.io/mobwork/reference/HTC.SEIR.html</loc>
</url>
<url>
<loc>https://dd-harp.github.io/mobwork/reference/HTC.SIR.html</loc>
</url>
Expand All @@ -54,6 +66,12 @@
<url>
<loc>https://dd-harp.github.io/mobwork/reference/dMYZdt.RMG.html</loc>
</url>
<url>
<loc>https://dd-harp.github.io/mobwork/reference/dXdt.SEIRdX.html</loc>
</url>
<url>
<loc>https://dd-harp.github.io/mobwork/reference/dXdt.SEIRdXdH.html</loc>
</url>
<url>
<loc>https://dd-harp.github.io/mobwork/reference/dXdt.SIRdX.html</loc>
</url>
Expand All @@ -66,6 +84,9 @@
<url>
<loc>https://dd-harp.github.io/mobwork/reference/get_inits_MYZ.RMG.html</loc>
</url>
<url>
<loc>https://dd-harp.github.io/mobwork/reference/get_inits_X.SEIR.html</loc>
</url>
<url>
<loc>https://dd-harp.github.io/mobwork/reference/get_inits_X.SIR.html</loc>
</url>
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<url>
<loc>https://dd-harp.github.io/mobwork/reference/make_MYZpar_RMG.html</loc>
</url>
<url>
<loc>https://dd-harp.github.io/mobwork/reference/make_Xinits_SEIR.html</loc>
</url>
<url>
<loc>https://dd-harp.github.io/mobwork/reference/make_Xinits_SIR.html</loc>
</url>
<url>
<loc>https://dd-harp.github.io/mobwork/reference/make_Xinits_garki.html</loc>
</url>
<url>
<loc>https://dd-harp.github.io/mobwork/reference/make_Xpar_SEIR.html</loc>
</url>
<url>
<loc>https://dd-harp.github.io/mobwork/reference/make_Xpar_SIR.html</loc>
</url>
Expand All @@ -144,6 +171,9 @@
<url>
<loc>https://dd-harp.github.io/mobwork/reference/make_indices_MYZ.RMG.html</loc>
</url>
<url>
<loc>https://dd-harp.github.io/mobwork/reference/make_indices_X.SEIR.html</loc>
</url>
<url>
<loc>https://dd-harp.github.io/mobwork/reference/make_indices_X.SIR.html</loc>
</url>
Expand All @@ -162,6 +192,9 @@
<url>
<loc>https://dd-harp.github.io/mobwork/reference/parse_deout_MYZ.RMG.html</loc>
</url>
<url>
<loc>https://dd-harp.github.io/mobwork/reference/parse_deout_X.SEIR.html</loc>
</url>
<url>
<loc>https://dd-harp.github.io/mobwork/reference/parse_deout_X.SIR.html</loc>
</url>
Expand Down Expand Up @@ -222,6 +255,9 @@
<url>
<loc>https://dd-harp.github.io/mobwork/reference/setup_MYZ.RMG.html</loc>
</url>
<url>
<loc>https://dd-harp.github.io/mobwork/reference/setup_X.SEIR.html</loc>
</url>
<url>
<loc>https://dd-harp.github.io/mobwork/reference/setup_X.SIR.html</loc>
</url>
Expand All @@ -240,6 +276,9 @@
<url>
<loc>https://dd-harp.github.io/mobwork/reference/update_inits_MYZ.RMG.html</loc>
</url>
<url>
<loc>https://dd-harp.github.io/mobwork/reference/update_inits_X.SEIR.html</loc>
</url>
<url>
<loc>https://dd-harp.github.io/mobwork/reference/update_inits_X.SIR.html</loc>
</url>
Expand All @@ -252,12 +291,18 @@
<url>
<loc>https://dd-harp.github.io/mobwork/reference/xde_eir2pr.html</loc>
</url>
<url>
<loc>https://dd-harp.github.io/mobwork/reference/xde_lines_X.SEIR.html</loc>
</url>
<url>
<loc>https://dd-harp.github.io/mobwork/reference/xde_lines_X.SIR.html</loc>
</url>
<url>
<loc>https://dd-harp.github.io/mobwork/reference/xde_lines_X.garki.html</loc>
</url>
<url>
<loc>https://dd-harp.github.io/mobwork/reference/xde_plot_X.SEIR.html</loc>
</url>
<url>
<loc>https://dd-harp.github.io/mobwork/reference/xde_plot_X.SIR.html</loc>
</url>
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