i hate this

.Rbuildignore

@@ -6,3 +6,4 @@
 ^docs$
 ^pkgdown$
 ^pf\.memory\.Rproj$
+^\.github$

.github/.gitignore

@@ -0,0 +1 @@
+*.html

.github/workflows/pkgdown.yaml

@@ -0,0 +1,48 @@
+# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
+# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
+on:
+  push:
+    branches: [main, master]
+  pull_request:
+    branches: [main, master]
+  release:
+    types: [published]
+  workflow_dispatch:
+
+name: pkgdown
+
+jobs:
+  pkgdown:
+    runs-on: ubuntu-latest
+    # Only restrict concurrency for non-PR jobs
+    concurrency:
+      group: pkgdown-${{ github.event_name != 'pull_request' || github.run_id }}
+    env:
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+    permissions:
+      contents: write
+    steps:
+      - uses: actions/checkout@v3
+
+      - uses: r-lib/actions/setup-pandoc@v2
+
+      - uses: r-lib/actions/setup-r@v2
+        with:
+          use-public-rspm: true
+
+      - uses: r-lib/actions/setup-r-dependencies@v2
+        with:
+          extra-packages: any::pkgdown, local::.
+          needs: website
+
+      - name: Build site
+        run: pkgdown::build_site_github_pages(new_process = FALSE, install = FALSE)
+        shell: Rscript {0}
+
+      - name: Deploy to GitHub pages 🚀
+        if: github.event_name != 'pull_request'
+        uses: JamesIves/[email protected]
+        with:
+          clean: false
+          branch: gh-pages
+          folder: docs

_pkgdown.yml

@@ -1,151 +1,4 @@
-url: https://dd-harp.github.io/pf.memory/
+url: ~
 template:
   bootstrap: 5
-navbar:
-  left:
-  - text: Functions
-    href: reference/index.html
-  - text: Articles
-    menu:
-    - text: Force of Infection
-      href: articles/FoI-TraceFunctions.html
-    - text: Dynamics
-      href: articles/Dynamics.html
-    - text: Multiplicity of Infection
-      href: articles/MoI.html
-  right:
-  - icon: fa-github
-    href: https://github.com/dd-harp/exDE/
-home:
-  sidebar:
-    structure:
-    - links
-    - license
-    - community
-    - citation
-    - authors
-    - dev
-    - custom_news
-    components:
-      custom_news:
-        title: Changelog
-        text: <a href="news/index.html">News</a>
-reference:
-- title: Force of Infection
-  desc: |
-    Methods to set up FoI trace functions
-  contents:
-  - FoI
-- subtitle: FoI by Age
-  desc: |
-    Specialized methods to compute the FoI by Age
-  contents:
-  - par_flatAge
-- title: Other Methods
-  desc: |
-    Other
-  contents:
-  - Bda
-  - Detect
-  - Detect.nb
-  - Detect.pois
-  - DetectBda
-  - DetectPM
-  - DetectPa
-  - MoIDistPlot
-  - MoIPM
-  - Wda
-  - Wda.delta
-  - Wda.none
-  - ageFoI
-  - ageFoI.flat
-  - ageFoI.type2
-  - alpha2mu
-  - alpha2mu.W
-  - alpha2mu.base
-  - binnedCounts
-  - binnedCounts.nb
-  - binnedCounts.pois
-  - cdfConvolve2
-  - cdfConvolve2a
-  - cdfConvolve2b
-  - dAoI
-  - dAoIda
-  - dAoY
-  - dAoYN
-  - dAoYda
-  - dBda
-  - dCounts
-  - dCounts.nb
-  - dCounts.pois
-  - dCountsBa
-  - dCountsPa
-  - dDensityPa
-  - dDensityPaConvolve2
-  - dDensityPalpha
-  - dDensityPmu
-  - dMoIda
-  - dbeta1
-  - dmda
-  - dpda
-  - log10RBC
-  - log10RBC.static
-  - meanCountsBa
-  - meanCountsPa
-  - meanMoI
-  - momentAoI
-  - momentAoY
-  - nzPois
-  - pAoI
-  - pAoY
-  - pAoYN
-  - pAoY_long
-  - pBda
-  - pCounts
-  - pCounts.nb
-  - pCounts.pois
-  - pCountsBa
-  - pCountsPa
-  - pDensityPalpha
-  - pDensityPmu
-  - par_Wda_delta
-  - par_Wda_none
-  - par_alpha2mu.W
-  - par_alpha2mu_base
-  - par_expSeason
-  - par_flatSeason
-  - par_flatTrend
-  - par_lRBC_static
-  - par_nbCounts
-  - par_poisCounts
-  - par_sigma_abc
-  - par_sinSeason
-  - par_type2Age
-  - pbeta1
-  - qDensityPalpha
-  - qDensityPmu
-  - qbeta1
-  - rAoI
-  - rAoY
-  - rAoYN
-  - rBda
-  - rDensityPalpha
-  - rDensityPmu
-  - rRda
-  - rbeta1
-  - salpha2mu
-  - seasonalFoI
-  - seasonalFoI.exp
-  - seasonalFoI.flat
-  - seasonalFoI.sin
-  - sigma
-  - sigma.abc
-  - solveMMinfty
-  - solve_dAoI
-  - solve_dAoYda
-  - solve_dm
-  - solve_dpda
-  - trendFoI
-  - trendFoI.flat
-  - truePRa
-  - zda
+