init tests, add codecov

* add test data and initial test * Create python-package.yml * if it works and its not pretty ...it still works * add xr to test dependencies * use micromamba for deps * this is going to get pretty "move fast break stuff" * ...sigh * here we go again * I'm close.. * actually activate env * add nc engine * add test coverage * add coverage to actions * codecov config * idk anymore * eh? * double take? * disp test result * ?? * pls
deeplycloudy · Dec 24, 2023 · 7895870 · 7895870
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diff --git a/.github/workflows/python-package.yml b/.github/workflows/python-package.yml
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+# This workflow will install Python dependencies, run tests and lint with a variety of Python versions
+# For more information see: https://docs.github.com/en/actions/automating-builds-and-tests/building-and-testing-python
+
+name: Python package
+
+on:
+  push:
+    branches: [ "master" ]
+  pull_request:
+    branches: [ "master" ]
+
+jobs:
+  build:
+
+    runs-on: ubuntu-latest
+    strategy:
+      fail-fast: false
+      matrix:
+        python-version: ["3.9", "3.10", "3.11"]
+
+    steps:
+    - uses: actions/checkout@v3
+    - name: Set up Python ${{ matrix.python-version }}
+      uses: actions/setup-python@v3
+      with:
+        python-version: ${{ matrix.python-version }}
+    - name: Install dependencies
+      run: |
+        "${SHELL}" <(curl -L micro.mamba.pm/install.sh)
+        eval "$(micromamba shell hook --shell bash)"
+        micromamba activate base
+        micromamba install pytest-cov xarray netcdf4 -c conda-forge
+        python -m pip install .
+    - name: Test with pytest
+      run: |
+        eval "$(micromamba shell hook --shell bash)"
+        micromamba activate base
+        coverage run --source=pyxlma -m pytest tests/
+        coverage xml
+    - name: Upload coverage reports to Codecov
+      uses: codecov/codecov-action@v3
+      env:
+        CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}
diff --git a/examples/data/lma/WTLMA_231224_005701_0001.dat.gz b/examples/data/lma/WTLMA_231224_005701_0001.dat.gz
diff --git a/examples/data/lma/WTLMA_231224_005702_0001.dat.gz b/examples/data/lma/WTLMA_231224_005702_0001.dat.gz
diff --git a/examples/data/lma/WTLMA_231224_005704_0001.dat.gz b/examples/data/lma/WTLMA_231224_005704_0001.dat.gz
diff --git a/examples/data/lma/WTLMA_231224_005705_0001.dat.gz b/examples/data/lma/WTLMA_231224_005705_0001.dat.gz
diff --git a/examples/data/lma/WTLMA_231224_005706_0001.dat.gz b/examples/data/lma/WTLMA_231224_005706_0001.dat.gz
diff --git a/examples/data/lma/WTLMA_231224_005707_0001.dat.gz b/examples/data/lma/WTLMA_231224_005707_0001.dat.gz
diff --git a/examples/data/lma/WTLMA_231224_005711_0001.dat.gz b/examples/data/lma/WTLMA_231224_005711_0001.dat.gz
diff --git a/examples/data/lma/WTLMA_231224_005712_0001.dat.gz b/examples/data/lma/WTLMA_231224_005712_0001.dat.gz
diff --git a/examples/data/lma/WTLMA_231224_005713_0001.dat.gz b/examples/data/lma/WTLMA_231224_005713_0001.dat.gz
diff --git a/examples/data/lma/WTLMA_231224_005714_0001.dat.gz b/examples/data/lma/WTLMA_231224_005714_0001.dat.gz
diff --git a/examples/data/lma/WTLMA_231224_005715_0001.dat.gz b/examples/data/lma/WTLMA_231224_005715_0001.dat.gz
diff --git a/examples/data/lma/WTLMA_231224_005718_0001.dat.gz b/examples/data/lma/WTLMA_231224_005718_0001.dat.gz
diff --git a/examples/data/lma/WTLMA_231224_005719_0001.dat.gz b/examples/data/lma/WTLMA_231224_005719_0001.dat.gz
diff --git a/examples/data/lma/WTLMA_231224_005720_0001.dat.gz b/examples/data/lma/WTLMA_231224_005720_0001.dat.gz
diff --git a/examples/data/lma/WTLMA_231224_005722_0001.dat.gz b/examples/data/lma/WTLMA_231224_005722_0001.dat.gz
diff --git a/examples/data/lma/WTLMA_231224_005723_0001.dat.gz b/examples/data/lma/WTLMA_231224_005723_0001.dat.gz
diff --git a/examples/data/lma/WTLMA_231224_005724_0001.dat.gz b/examples/data/lma/WTLMA_231224_005724_0001.dat.gz
diff --git a/examples/data/lma/WTLMA_231224_005725_0001.dat.gz b/examples/data/lma/WTLMA_231224_005725_0001.dat.gz
diff --git a/examples/data/lma/WTLMA_231224_005726_0001.dat.gz b/examples/data/lma/WTLMA_231224_005726_0001.dat.gz
diff --git a/examples/data/lma/WTLMA_231224_005728_0001.dat.gz b/examples/data/lma/WTLMA_231224_005728_0001.dat.gz
diff --git a/examples/data/lma/WTLMA_231224_005729_0001.dat.gz b/examples/data/lma/WTLMA_231224_005729_0001.dat.gz
diff --git a/examples/data/lma/WTLMA_231224_005730_0001.dat.gz b/examples/data/lma/WTLMA_231224_005730_0001.dat.gz
diff --git a/examples/data/lma/WTLMA_231224_005731_0001.dat.gz b/examples/data/lma/WTLMA_231224_005731_0001.dat.gz
diff --git a/examples/data/lma/WTLMA_231224_005733_0001.dat.gz b/examples/data/lma/WTLMA_231224_005733_0001.dat.gz
diff --git a/examples/data/lma/WTLMA_231224_005734_0001.dat.gz b/examples/data/lma/WTLMA_231224_005734_0001.dat.gz
diff --git a/examples/data/lma/WTLMA_231224_005736_0001.dat.gz b/examples/data/lma/WTLMA_231224_005736_0001.dat.gz
diff --git a/examples/data/lma/WTLMA_231224_005737_0001.dat.gz b/examples/data/lma/WTLMA_231224_005737_0001.dat.gz
diff --git a/examples/data/lma/WTLMA_231224_005738_0001.dat.gz b/examples/data/lma/WTLMA_231224_005738_0001.dat.gz
diff --git a/examples/data/lma/WTLMA_231224_005739_0001.dat.gz b/examples/data/lma/WTLMA_231224_005739_0001.dat.gz
diff --git a/examples/data/lma/WTLMA_231224_005740_0001.dat.gz b/examples/data/lma/WTLMA_231224_005740_0001.dat.gz
diff --git a/examples/data/lma/WTLMA_231224_005741_0001.dat.gz b/examples/data/lma/WTLMA_231224_005741_0001.dat.gz
diff --git a/examples/data/lma/WTLMA_231224_005743_0001.dat.gz b/examples/data/lma/WTLMA_231224_005743_0001.dat.gz
diff --git a/examples/data/lma/WTLMA_231224_005744_0001.dat.gz b/examples/data/lma/WTLMA_231224_005744_0001.dat.gz
diff --git a/examples/data/lma/WTLMA_231224_005745_0001.dat.gz b/examples/data/lma/WTLMA_231224_005745_0001.dat.gz
diff --git a/examples/data/lma/WTLMA_231224_005746_0001.dat.gz b/examples/data/lma/WTLMA_231224_005746_0001.dat.gz
diff --git a/examples/data/lma/WTLMA_231224_005750_0001.dat.gz b/examples/data/lma/WTLMA_231224_005750_0001.dat.gz
diff --git a/examples/data/lma/WTLMA_231224_005751_0001.dat.gz b/examples/data/lma/WTLMA_231224_005751_0001.dat.gz
diff --git a/examples/data/lma/WTLMA_231224_005753_0001.dat.gz b/examples/data/lma/WTLMA_231224_005753_0001.dat.gz
diff --git a/examples/data/lma/WTLMA_231224_005754_0001.dat.gz b/examples/data/lma/WTLMA_231224_005754_0001.dat.gz
diff --git a/examples/data/lma/WTLMA_231224_005755_0001.dat.gz b/examples/data/lma/WTLMA_231224_005755_0001.dat.gz
diff --git a/examples/data/lma/WTLMA_231224_005758_0001.dat.gz b/examples/data/lma/WTLMA_231224_005758_0001.dat.gz
diff --git a/examples/data/lma/WTLMA_231224_005759_0001.dat.gz b/examples/data/lma/WTLMA_231224_005759_0001.dat.gz
diff --git a/examples/data/lma_netcdf/lma.nc b/examples/data/lma_netcdf/lma.nc
diff --git a/tests/test_io.py b/tests/test_io.py
@@ -0,0 +1,15 @@
+"""Test functionality of pyxlma.io"""
+
+from os import listdir
+from datetime import datetime as dt
+import xarray as xr
+from pyxlma.lmalib.io import read as lma_read
+
+
+def test_read_mf_dataset():
+    """Test reading of multiple .dat.gz files into a single lma dataset"""
+    files_to_read = listdir('examples/data/lma/')
+    files_to_read = ['examples/data/lma/'+file for file in files_to_read]
+    dataset, start_date = lma_read.dataset(files_to_read)
+    assert start_date == dt(2023, 12, 24, 0, 57, 1)
+    assert dataset == xr.open_dataset('examples/data/lma_netcdf/lma.nc')