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Merge pull request #57 from deepmodeling/update/2024.08.22
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Best-of update: 2024.08.22
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njzjz authored Aug 22, 2024
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Expand Up @@ -46,20 +46,20 @@ This curated list contains 38 awesome open-source projects with a total of 3.3K

<details><summary><b><a href="https://github.com/deepmodeling/deepmd-kit">DeePMD-kit</a></b> (🥇28 · ⭐ 1.4K) - A deep learning package for many-body potential energy representation and molecular dynamics. <code><a href="http://bit.ly/37RvQcA">LGPL-3.0</a></code></summary>

- [GitHub](https://github.com/deepmodeling/deepmd-kit) (👨‍💻 69 · 🔀 480 · 📥 38K · 📦 16 · 📋 750 - 10% open · ⏱️ 06.07.2024):
- [GitHub](https://github.com/deepmodeling/deepmd-kit) (👨‍💻 69 · 🔀 480 · 📥 39K · 📦 16 · 📋 750 - 10% open · ⏱️ 06.07.2024):

```
git clone https://github.com/deepmodeling/deepmd-kit
```
- [PyPi](https://pypi.org/project/deepmd-kit) (📥 1.4K / month):
- [PyPi](https://pypi.org/project/deepmd-kit) (📥 1.5K / month):
```
pip install deepmd-kit
```
- [Conda](https://anaconda.org/conda-forge/deepmd-kit) (📥 860K · ⏱️ 27.07.2024):
- [Conda](https://anaconda.org/conda-forge/deepmd-kit) (📥 890K · ⏱️ 27.07.2024):
```
conda install -c conda-forge deepmd-kit
```
- [npm](https://www.npmjs.com/package/deepmd-kit) (📥 17 / month):
- [npm](https://www.npmjs.com/package/deepmd-kit) (📥 15 / month):
```
npm install deepmd-kit
```
Expand All @@ -68,19 +68,19 @@ This curated list contains 38 awesome open-source projects with a total of 3.3K
docker pull deepmodeling/deepmd-kit
```
</details>
<details><summary><b><a href="https://github.com/deepmodeling/abacus-develop">ABACUS</a></b> (🥇26 · ⭐ 150 · 📈) - An electronic structure package based on either plane wave basis or numerical atomic orbitals. <code><a href="http://bit.ly/37RvQcA">LGPL-3.0</a></code></summary>
<details><summary><b><a href="https://github.com/deepmodeling/abacus-develop">ABACUS</a></b> (🥇26 · ⭐ 160) - An electronic structure package based on either plane wave basis or numerical atomic orbitals. <code><a href="http://bit.ly/37RvQcA">LGPL-3.0</a></code></summary>

- [GitHub](https://github.com/deepmodeling/abacus-develop) (👨‍💻 120 · 🔀 130 · 📋 1.8K - 11% open · ⏱️ 15.08.2024):
- [GitHub](https://github.com/deepmodeling/abacus-develop) (👨‍💻 120 · 🔀 130 · 📋 1.8K - 10% open · ⏱️ 21.08.2024):

```
git clone https://github.com/deepmodeling/abacus-develop
```
- [Conda](https://anaconda.org/conda-forge/abacus) (📥 110K · ⏱️ 13.08.2024):
- [Conda](https://anaconda.org/conda-forge/abacus) (📥 120K · ⏱️ 13.08.2024):
```
conda install -c conda-forge abacus
```
</details>
<details><summary><b><a href="https://github.com/deepmodeling/dpdata">dpdata</a></b> (🥇23 · ⭐ 200 · 📉) - Manipulating multiple atomic simulation data formats, including DeePMD-kit, VASP, LAMMPS, ABACUS, etc. <code><a href="http://bit.ly/37RvQcA">LGPL-3.0</a></code></summary>
<details><summary><b><a href="https://github.com/deepmodeling/dpdata">dpdata</a></b> (🥇23 · ⭐ 200) - Manipulating multiple atomic simulation data formats, including DeePMD-kit, VASP, LAMMPS, ABACUS, etc. <code><a href="http://bit.ly/37RvQcA">LGPL-3.0</a></code></summary>

- [GitHub](https://github.com/deepmodeling/dpdata) (👨‍💻 60 · 🔀 120 · 📦 120 · 📋 96 - 16% open · ⏱️ 06.06.2024):

Expand All @@ -107,7 +107,7 @@ This curated list contains 38 awesome open-source projects with a total of 3.3K
```
git clone https://github.com/deepmodeling/dpgen
```
- [PyPi](https://pypi.org/project/dpgen) (📥 320 / month):
- [PyPi](https://pypi.org/project/dpgen) (📥 390 / month):
```
pip install dpgen
```
Expand All @@ -118,12 +118,12 @@ This curated list contains 38 awesome open-source projects with a total of 3.3K
</details>
<details><summary><b><a href="https://github.com/deepmodeling/dpdispatcher">dpdispatcher</a></b> (🥇22 · ⭐ 42) - generate HPC scheduler systems jobs input scripts and submit these scripts to HPC systems and poke until they finish. <code><a href="http://bit.ly/37RvQcA">LGPL-3.0</a></code></summary>

- [GitHub](https://github.com/deepmodeling/dpdispatcher) (👨‍💻 46 · 🔀 53 · 📦 50 · 📋 75 - 20% open · ⏱️ 03.08.2024):
- [GitHub](https://github.com/deepmodeling/dpdispatcher) (👨‍💻 46 · 🔀 53 · 📦 50 · 📋 75 - 20% open · ⏱️ 20.08.2024):

```
git clone https://github.com/deepmodeling/dpdispatcher
```
- [PyPi](https://pypi.org/project/dpdispatcher) (📥 2.2K / month):
- [PyPi](https://pypi.org/project/dpdispatcher) (📥 2.4K / month):
```
pip install dpdispatcher
```
Expand All @@ -136,23 +136,23 @@ This curated list contains 38 awesome open-source projects with a total of 3.3K
docker pull dptechnology/dpdispatcher
```
</details>
<details><summary><b><a href="https://github.com/deepmodeling/reacnetgenerator">reacnetgenerator</a></b> (🥈19 · ⭐ 63 · 📉) - an automatic reaction network generator for reactive molecular dynamics simulation. <code><a href="http://bit.ly/37RvQcA">LGPL-3.0</a></code></summary>
<details><summary><b><a href="https://github.com/deepmodeling/reacnetgenerator">reacnetgenerator</a></b> (🥈19 · ⭐ 63) - an automatic reaction network generator for reactive molecular dynamics simulation. <code><a href="http://bit.ly/37RvQcA">LGPL-3.0</a></code></summary>

- [GitHub](https://github.com/deepmodeling/reacnetgenerator) (👨‍💻 18 · 🔀 35 · 📦 2 · 📋 120 - 3% open · ⏱️ 09.08.2024):

```
git clone https://github.com/deepmodeling/reacnetgenerator
```
- [PyPi](https://pypi.org/project/reacnetgenerator) (📥 430 / month):
- [PyPi](https://pypi.org/project/reacnetgenerator) (📥 760 / month):
```
pip install reacnetgenerator
```
- [Conda](https://anaconda.org/conda-forge/reacnetgenerator) (📥 360K · ⏱️ 10.05.2024):
- [Conda](https://anaconda.org/conda-forge/reacnetgenerator) (📥 370K · ⏱️ 10.05.2024):
```
conda install -c conda-forge reacnetgenerator
```
</details>
<details><summary><b><a href="https://github.com/deepmodeling/dflow">dflow</a></b> (🥈19 · ⭐ 60) - Dflow is a Python framework for constructing scientific computing workflows (e.g. concurrent learning workflows).. <code><a href="http://bit.ly/37RvQcA">LGPL-3.0</a></code></summary>
<details><summary><b><a href="https://github.com/deepmodeling/dflow">dflow</a></b> (🥈19 · ⭐ 61) - Dflow is a Python framework for constructing scientific computing workflows (e.g. concurrent learning workflows).. <code><a href="http://bit.ly/37RvQcA">LGPL-3.0</a></code></summary>

- [GitHub](https://github.com/deepmodeling/dflow) (👨‍💻 22 · 🔀 25 · 📋 35 - 40% open · ⏱️ 07.08.2024):

Expand All @@ -172,7 +172,7 @@ This curated list contains 38 awesome open-source projects with a total of 3.3K
docker pull dptechnology/dflow
```
</details>
<details><summary><b><a href="https://github.com/deepmodeling/dargs">dargs</a></b> (🥈19 · ⭐ 5 · 📉) - Argument processing for the deep modeling project. <code><a href="http://bit.ly/37RvQcA">LGPL-3.0</a></code></summary>
<details><summary><b><a href="https://github.com/deepmodeling/dargs">dargs</a></b> (🥈19 · ⭐ 5) - Argument processing for the deep modeling project. <code><a href="http://bit.ly/37RvQcA">LGPL-3.0</a></code></summary>

- [GitHub](https://github.com/deepmodeling/dargs) (👨‍💻 7 · 🔀 3 · 📦 120 · 📋 8 - 25% open · ⏱️ 17.07.2024):

Expand All @@ -183,45 +183,57 @@ This curated list contains 38 awesome open-source projects with a total of 3.3K
```
pip install dargs
```
- [Conda](https://anaconda.org/conda-forge/dargs) (📥 28K · ⏱️ 15.07.2024):
- [Conda](https://anaconda.org/conda-forge/dargs) (📥 29K · ⏱️ 15.07.2024):
```
conda install -c conda-forge dargs
```
</details>
<details><summary><b><a href="https://github.com/deepmodeling/dpgen2">DPGEN2</a></b> (🥈17 · ⭐ 31) - 2nd generation of the Deep Potential GENerator. <code><a href="http://bit.ly/37RvQcA">LGPL-3.0</a></code></summary>
<details><summary><b><a href="https://github.com/deepmodeling/deepflame-dev">DeepFlame</a></b> (🥈18 · ⭐ 130 · 📈) - A deep learning empowered open-source platform for reacting flow simulations. <code><a href="http://bit.ly/2M0xdwT">GPL-3.0</a></code></summary>

- [GitHub](https://github.com/deepmodeling/dpgen2) (👨‍💻 14 · 🔀 24 · 📦 4 · 📋 32 - 28% open · ⏱️ 13.08.2024):
- [GitHub](https://github.com/deepmodeling/deepflame-dev) (👨‍💻 24 · 🔀 58 · 📋 46 - 36% open · ⏱️ 22.08.2024):

```
git clone https://github.com/deepmodeling/dpgen2
git clone https://github.com/deepmodeling/deepflame-dev
```
- [PyPi](https://pypi.org/project/dpgen2) (📥 55 / month):
</details>
<details><summary><b><a href="https://github.com/deepmodeling/DeePTB">DeePTB</a></b> (🥈17 · ⭐ 44 · 📈) - DeePTB: A deep learning package for tight-binding approach with ab initio accuracy. <code><a href="http://bit.ly/37RvQcA">LGPL-3.0</a></code></summary>

- [GitHub](https://github.com/deepmodeling/DeePTB) (👨‍💻 9 · 🔀 14 · 📦 1 · 📋 34 - 20% open · ⏱️ 21.08.2024):

```
pip install dpgen2
git clone https://github.com/deepmodeling/DeePTB
```
- [Docker Hub](https://hub.docker.com/r/dptechnology/dpgen2) (📥 3.4K · ⏱️ 13.08.2024):
- [PyPi](https://pypi.org/project/dptb) (📥 240 / month):
```
docker pull dptechnology/dpgen2
pip install dptb
```
</details>
<details><summary><b><a href="https://github.com/deepmodeling/deepflame-dev">DeepFlame</a></b> (🥈16 · ⭐ 130) - A deep learning empowered open-source platform for reacting flow simulations. <code><a href="http://bit.ly/2M0xdwT">GPL-3.0</a></code></summary>
<details><summary><b><a href="https://github.com/deepmodeling/dpgen2">DPGEN2</a></b> (🥈17 · ⭐ 31) - 2nd generation of the Deep Potential GENerator. <code><a href="http://bit.ly/37RvQcA">LGPL-3.0</a></code></summary>

- [GitHub](https://github.com/deepmodeling/deepflame-dev) (👨‍💻 24 · 🔀 58 · 📋 46 - 36% open · ⏱️ 05.08.2024):
- [GitHub](https://github.com/deepmodeling/dpgen2) (👨‍💻 14 · 🔀 24 · 📦 4 · 📋 32 - 28% open · ⏱️ 22.08.2024):

```
git clone https://github.com/deepmodeling/deepflame-dev
git clone https://github.com/deepmodeling/dpgen2
```
- [PyPi](https://pypi.org/project/dpgen2) (📥 73 / month):
```
pip install dpgen2
```
- [Docker Hub](https://hub.docker.com/r/dptechnology/dpgen2) (📥 3.5K · ⏱️ 22.08.2024):
```
docker pull dptechnology/dpgen2
```
</details>
<details><summary><b><a href="https://github.com/deepmodeling/DeePTB">DeePTB</a></b> (🥈16 · ⭐ 40 · 📈) - DeePTB: A deep learning package for tight-binding approach with ab initio accuracy. <code><a href="http://bit.ly/37RvQcA">LGPL-3.0</a></code></summary>
<details><summary><b><a href="https://github.com/deepmodeling/jax-fem">JAX-FEM</a></b> (🥈13 · ⭐ 220 · 📈) - Differentiable Finite Element Method with JAX. <code><a href="http://bit.ly/2M0xdwT">GPL-3.0</a></code></summary>

- [GitHub](https://github.com/deepmodeling/DeePTB) (👨‍💻 9 · 🔀 14 · 📦 1 · 📋 34 - 20% open · ⏱️ 15.08.2024):
- [GitHub](https://github.com/deepmodeling/jax-fem) (👨‍💻 7 · 🔀 33 · 📦 1 · 📋 25 - 72% open · ⏱️ 19.08.2024):

```
git clone https://github.com/deepmodeling/DeePTB
git clone https://github.com/deepmodeling/jax-fem
```
- [PyPi](https://pypi.org/project/dptb) (📥 140 / month):
- [PyPi](https://pypi.org/project/jax-fem) (📥 200 / month):
```
pip install dptb
pip install jax-fem
```
</details>
<details><summary><b><a href="https://github.com/deepmodeling/DMFF">DMFF</a></b> (🥈13 · ⭐ 150 · 💤) - DMFF (Differentiable Molecular Force Field) is a Jax-based python package that provides a full differentiable.. <code><a href="http://bit.ly/37RvQcA">LGPL-3.0</a></code></summary>
Expand All @@ -231,19 +243,19 @@ This curated list contains 38 awesome open-source projects with a total of 3.3K
```
git clone https://github.com/deepmodeling/DMFF
```
- [Conda](https://anaconda.org/conda-forge/dmff) (📥 670 · ⏱️ 06.01.2024):
- [Conda](https://anaconda.org/conda-forge/dmff) (📥 700 · ⏱️ 06.01.2024):
```
conda install -c conda-forge dmff
```
</details>
<details><summary><b><a href="https://github.com/deepmodeling/rid-kit">rid-kit</a></b> (🥈13 · ⭐ 42 · 📉) - Reinforced dynamics. <code><a href="http://bit.ly/37RvQcA">LGPL-3.0</a></code></summary>
<details><summary><b><a href="https://github.com/deepmodeling/rid-kit">rid-kit</a></b> (🥈13 · ⭐ 42) - Reinforced dynamics. <code><a href="http://bit.ly/37RvQcA">LGPL-3.0</a></code></summary>

- [GitHub](https://github.com/deepmodeling/rid-kit) (👨‍💻 14 · 🔀 21 · 📥 140 · 📦 1 · 📋 4 - 25% open · ⏱️ 27.06.2024):

```
git clone https://github.com/deepmodeling/rid-kit
```
- [PyPi](https://pypi.org/project/rid-kit) (📥 52 / month):
- [PyPi](https://pypi.org/project/rid-kit) (📥 81 / month):
```
pip install rid-kit
```
Expand All @@ -267,7 +279,7 @@ This curated list contains 38 awesome open-source projects with a total of 3.3K
```
git clone https://github.com/deepmodeling/dpgui
```
- [PyPi](https://pypi.org/project/dpgui) (📥 14K / month):
- [PyPi](https://pypi.org/project/dpgui) (📥 16K / month):
```
pip install dpgui
```
Expand All @@ -279,26 +291,14 @@ This curated list contains 38 awesome open-source projects with a total of 3.3K
```
git clone https://github.com/deepmodeling/deepmodeling_sphinx
```
- [PyPi](https://pypi.org/project/deepmodeling_sphinx) (📥 2.7K / month):
- [PyPi](https://pypi.org/project/deepmodeling_sphinx) (📥 2.4K / month):
```
pip install deepmodeling_sphinx
```
</details>
<details><summary><b><a href="https://github.com/deepmodeling/jax-fem">JAX-FEM</a></b> (🥉11 · ⭐ 210 · 📉) - Differentiable Finite Element Method with JAX. <code><a href="http://bit.ly/2M0xdwT">GPL-3.0</a></code></summary>

- [GitHub](https://github.com/deepmodeling/jax-fem) (👨‍💻 7 · 🔀 33 · 📦 1 · 📋 25 - 72% open · ⏱️ 24.07.2024):

```
git clone https://github.com/deepmodeling/jax-fem
```
- [PyPi](https://pypi.org/project/jax-fem) (📥 130 / month):
```
pip install jax-fem
```
</details>
<details><summary><b><a href="https://github.com/deepmodeling/GPUMD">GPUMD</a></b> (🥉11 · ⭐ 3 · 🐣) - Graphics Processing Units Molecular Dynamics. <code><a href="http://bit.ly/2M0xdwT">GPL-3.0</a></code></summary>

- [GitHub](https://github.com/deepmodeling/GPUMD) (👨‍💻 30 · ⏱️ 15.08.2024):
- [GitHub](https://github.com/deepmodeling/GPUMD) (👨‍💻 33 · ⏱️ 21.08.2024):

```
git clone https://github.com/deepmodeling/GPUMD
Expand All @@ -312,14 +312,14 @@ This curated list contains 38 awesome open-source projects with a total of 3.3K
git clone https://github.com/deepmodeling/deepks-kit
```
</details>
<details><summary><b><a href="https://github.com/deepmodeling/dpti">dpti</a></b> (🥉10 · ⭐ 19 · 📈) - A Python Package to Automate Thermodynamic Integration Calculations for Free Energy. <code><a href="http://bit.ly/37RvQcA">LGPL-3.0</a></code></summary>
<details><summary><b><a href="https://github.com/deepmodeling/dpti">dpti</a></b> (🥉10 · ⭐ 19) - A Python Package to Automate Thermodynamic Integration Calculations for Free Energy. <code><a href="http://bit.ly/37RvQcA">LGPL-3.0</a></code></summary>

- [GitHub](https://github.com/deepmodeling/dpti) (👨‍💻 19 · 🔀 20 · 📦 1 · ⏱️ 14.08.2024):

```
git clone https://github.com/deepmodeling/dpti
```
- [PyPi](https://pypi.org/project/dpti) (📥 43 / month):
- [PyPi](https://pypi.org/project/dpti) (📥 66 / month):
```
pip install dpti
```
Expand All @@ -331,26 +331,38 @@ This curated list contains 38 awesome open-source projects with a total of 3.3K
```
git clone https://github.com/deepmodeling/args
```
- [npm](https://www.npmjs.com/package/@deepmodeling/args) (📥 140 / month):
- [npm](https://www.npmjs.com/package/@deepmodeling/args) (📥 120 / month):
```
npm install @deepmodeling/args
```
</details>
<details><summary><b><a href="https://github.com/deepmodeling/fpop">fpop</a></b> (🥉8 · ⭐ 2) - <code><a href="http://bit.ly/37RvQcA">LGPL-3.0</a></code></summary>
<details><summary><b><a href="https://github.com/deepmodeling/fpop">fpop</a></b> (🥉9 · ⭐ 2 · 📈) - <code><a href="http://bit.ly/37RvQcA">LGPL-3.0</a></code></summary>

- [GitHub](https://github.com/deepmodeling/fpop) (👨‍💻 4 · 🔀 11 · 📦 8 · ⏱️ 01.07.2024):

```
git clone https://github.com/deepmodeling/fpop
```
- [PyPi](https://pypi.org/project/fpop) (📥 810 / month):
- [PyPi](https://pypi.org/project/fpop) (📥 1.3K / month):
```
pip install fpop
```
</details>
<details><summary><b><a href="https://github.com/deepmodeling/Uni-Fold">Uni-Fold</a></b> (🥉7 · ⭐ 91 · 💤) - <code><a href="http://bit.ly/3nYMfla">Apache-2</a></code></summary>

- [GitHub](https://github.com/deepmodeling/Uni-Fold) (👨‍💻 3 · 🔀 18 · ⏱️ 18.08.2022):

```
git clone https://github.com/deepmodeling/Uni-Fold
```
- [Docker Hub](https://hub.docker.com/r/dptechnology/unifold) (📥 680 · ⏱️ 08.01.2024):
```
docker pull dptechnology/unifold
```
</details>
<details><summary><b><a href="https://github.com/deepmodeling/community">community</a></b> (🥉7 · ⭐ 79) - DeepModeling community content. <code>Unlicensed</code></summary>

- [GitHub](https://github.com/deepmodeling/community) (👨‍💻 17 · 🔀 20 · ⏱️ 12.07.2024):
- [GitHub](https://github.com/deepmodeling/community) (👨‍💻 17 · 🔀 20 · ⏱️ 21.08.2024):

```
git clone https://github.com/deepmodeling/community
Expand All @@ -371,7 +383,7 @@ This curated list contains 38 awesome open-source projects with a total of 3.3K
```
git clone https://github.com/deepmodeling/fealpy
```
- [PyPi](https://pypi.org/project/fealpy) (📥 88 / month):
- [PyPi](https://pypi.org/project/fealpy) (📥 100 / month):
```
pip install fealpy
```
Expand All @@ -384,21 +396,9 @@ This curated list contains 38 awesome open-source projects with a total of 3.3K
git clone https://github.com/deepmodeling/blog
```
</details>
<details><summary><b><a href="https://github.com/deepmodeling/Uni-Fold">Uni-Fold</a></b> (🥉6 · ⭐ 91 · 💤) - <code><a href="http://bit.ly/3nYMfla">Apache-2</a></code></summary>

- [GitHub](https://github.com/deepmodeling/Uni-Fold) (👨‍💻 3 · 🔀 18 · ⏱️ 18.08.2022):

```
git clone https://github.com/deepmodeling/Uni-Fold
```
- [Docker Hub](https://hub.docker.com/r/dptechnology/unifold) (📥 670 · ⏱️ 08.01.2024):
```
docker pull dptechnology/unifold
```
</details>
<details><summary><b><a href="https://github.com/deepmodeling/tutorials">tutorials</a></b> (🥉6 · ⭐ 13 · 💤) - Tutorials for DeepModeling projects. <code>Unlicensed</code></summary>
<details><summary><b><a href="https://github.com/deepmodeling/tutorials">tutorials</a></b> (🥉6 · ⭐ 13) - Tutorials for DeepModeling projects. <code>Unlicensed</code></summary>

- [GitHub](https://github.com/deepmodeling/tutorials) (👨‍💻 10 · 🔀 22 · ⏱️ 26.09.2022):
- [GitHub](https://github.com/deepmodeling/tutorials) (👨‍💻 10 · 🔀 22 · ⏱️ 21.08.2024):

```
git clone https://github.com/deepmodeling/tutorials
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