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28 changes: 14 additions & 14 deletions README.md
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Expand Up @@ -46,7 +46,7 @@ Sagan Postdoctoral Fellow, University of Washington, 2015–2017.
<div class="list">


[**jax**](https://github.com/google/jax)29612 stars / 2703 forks
[**jax**](https://github.com/google/jax)29618 stars / 2703 forks
Composable transformations of Python+NumPy programs: differentiate,
vectorize, JIT to GPU/TPU, and more
[\[docs\]](http://jax.readthedocs.io/)
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## Publications

refereed: 104 / first author: 9 / citations: 20,890 / h-index: 46
(2024-08-25)
refereed: 104 / first author: 9 / citations: 20,899 / h-index: 46
(2024-08-26)

### Refereed publications

Expand Down Expand Up @@ -237,7 +237,7 @@ Sustaining and Growing a Community-oriented Open-source Project and the
Latest Major Release (v5.0) of the Core
Package](http://dx.doi.org/10.3847/1538-4357/ac7c74)*, The Astrophysical
Journal, **935**, 167
([arXiv:2206.14220](http://arxiv.org/abs/2206.14220)) \[[1784
([arXiv:2206.14220](http://arxiv.org/abs/2206.14220)) \[[1789
citations](https://ui.adsabs.harvard.edu/abs/2022ApJ...935..167A)\]

Luger, Rodrigo; Agol, Eric; Bartolić, Fran; & **Foreman-Mackey,
Expand Down Expand Up @@ -381,7 +381,7 @@ citations](https://ui.adsabs.harvard.edu/abs/2021MNRAS.504.3561H)\]
exoplanet data & other astronomical time
series](http://dx.doi.org/10.21105/joss.03285)*, The Journal of Open
Source Software, **6**, 3285
([arXiv:2105.01994](http://arxiv.org/abs/2105.01994)) \[[149
([arXiv:2105.01994](http://arxiv.org/abs/2105.01994)) \[[150
citations](https://ui.adsabs.harvard.edu/abs/2021JOSS....6.3285F)\]

David, Trevor J.; Contardo, Gabriella; Sandoval, Angeli; Angus, Ruth;
Expand Down Expand Up @@ -648,14 +648,6 @@ Journal, **154**, 220
([arXiv:1703.09710](http://arxiv.org/abs/1703.09710)) \[[626
citations](https://ui.adsabs.harvard.edu/abs/2017AJ....154..220F)\]

Montet, Benjamin T.; Tovar, Guadalupe; & **Foreman-Mackey, Daniel**,
2017, *[Long-term Photometric Variability in Kepler Full-frame Images:
Magnetic Cycles of Sun-like
Stars](http://dx.doi.org/10.3847/1538-4357/aa9e00)*, The Astrophysical
Journal, **851**, 116
([arXiv:1705.07928](http://arxiv.org/abs/1705.07928)) \[[81
citations](https://ui.adsabs.harvard.edu/abs/2017ApJ...851..116M)\]

Grunblatt, Samuel K.; Huber, Daniel; Gaidos, Eric; Lopez, Eric D.;
*et al.* (incl. **DFM**), 2017, *[Seeing Double with K2: Testing
Re-inflation with Two Remarkably Similar Planets around Red Giant Branch
Expand All @@ -664,6 +656,14 @@ Journal, **154**, 254
([arXiv:1706.05865](http://arxiv.org/abs/1706.05865)) \[[69
citations](https://ui.adsabs.harvard.edu/abs/2017AJ....154..254G)\]

Montet, Benjamin T.; Tovar, Guadalupe; & **Foreman-Mackey, Daniel**,
2017, *[Long-term Photometric Variability in Kepler Full-frame Images:
Magnetic Cycles of Sun-like
Stars](http://dx.doi.org/10.3847/1538-4357/aa9e00)*, The Astrophysical
Journal, **851**, 116
([arXiv:1705.07928](http://arxiv.org/abs/1705.07928)) \[[81
citations](https://ui.adsabs.harvard.edu/abs/2017ApJ...851..116M)\]

Luger, Rodrigo; **Foreman-Mackey, Daniel**; & Hogg, David W., 2017,
*[Linear Models for Systematics and
Nuisances](http://dx.doi.org/10.3847/2515-5172/aa96b5)*, Research Notes
Expand Down Expand Up @@ -858,7 +858,7 @@ citations](https://ui.adsabs.harvard.edu/abs/2013AJ....146....7B)\]
Jonathan, 2013, *[emcee: The MCMC
Hammer](http://dx.doi.org/10.1086/670067)*, Publications of the
Astronomical Society of the Pacific, **125**, 306
([arXiv:1202.3665](http://arxiv.org/abs/1202.3665)) \[[9337
([arXiv:1202.3665](http://arxiv.org/abs/1202.3665)) \[[9340
citations](https://ui.adsabs.harvard.edu/abs/2013PASP..125..306F)\]

Weisz, Daniel R.; Fouesneau, Morgan; Hogg, David W.; Rix, Hans-Walter;
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44 changes: 22 additions & 22 deletions data/pubs.json
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"Zonca, Andrea",
"Astropy Project Contributors"
],
"citations": 1784,
"citations": 1789,
"doctype": "article",
"doi": "10.3847/1538-4357/ac7c74",
"page": 167,
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"Price-Whelan, Adrian",
"Savel, Arjun"
],
"citations": 149,
"citations": 150,
"doctype": "article",
"doi": "10.21105/joss.03285",
"page": 3285,
Expand Down Expand Up @@ -5878,24 +5878,6 @@
"volume": "154",
"year": "2017"
},
{
"arxiv": "1705.07928",
"authors": [
"Montet, Benjamin T.",
"Tovar, Guadalupe",
"Foreman-Mackey, Daniel"
],
"citations": 81,
"doctype": "article",
"doi": "10.3847/1538-4357/aa9e00",
"page": 116,
"pub": "The Astrophysical Journal",
"pubdate": "2017-12-00",
"title": "Long-term Photometric Variability in Kepler Full-frame Images: Magnetic Cycles of Sun-like Stars",
"url": "https://ui.adsabs.harvard.edu/abs/2017ApJ...851..116M",
"volume": "851",
"year": "2017"
},
{
"arxiv": "1706.05865",
"authors": [
Expand Down Expand Up @@ -5929,6 +5911,24 @@
"volume": "154",
"year": "2017"
},
{
"arxiv": "1705.07928",
"authors": [
"Montet, Benjamin T.",
"Tovar, Guadalupe",
"Foreman-Mackey, Daniel"
],
"citations": 81,
"doctype": "article",
"doi": "10.3847/1538-4357/aa9e00",
"page": 116,
"pub": "The Astrophysical Journal",
"pubdate": "2017-12-00",
"title": "Long-term Photometric Variability in Kepler Full-frame Images: Magnetic Cycles of Sun-like Stars",
"url": "https://ui.adsabs.harvard.edu/abs/2017ApJ...851..116M",
"volume": "851",
"year": "2017"
},
{
"arxiv": "1710.11136",
"authors": [
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"Brewer, Brendon J.",
"Foreman-Mackey, Daniel"
],
"citations": 26,
"citations": 25,
"doctype": "eprint",
"doi": "10.48550/arXiv.1606.03757",
"page": null,
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"Lang, Dustin",
"Goodman, Jonathan"
],
"citations": 9337,
"citations": 9340,
"doctype": "article",
"doi": "10.1086/670067",
"page": 306,
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2 changes: 1 addition & 1 deletion data/repos.json
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"homepageUrl": "http://jax.readthedocs.io/",
"forkCount": 2703,
"stargazers": {
"totalCount": 29612
"totalCount": 29618
},
"watchers": {
"totalCount": 325
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10 changes: 5 additions & 5 deletions tex/pubs_ref.tex
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Expand Up @@ -36,7 +36,7 @@

\item[{\color{numcolor}\scriptsize86}] Farrell, Eoin; Jermyn, Adam S.; Cantiello, Matteo; \& \textbf{Foreman-Mackey, Daniel}, 2022, \doi{10.3847/1538-4357/ac8423}{The Initial Magnetic Field Distribution in AB Stars}, The Astrophysical Journal, \textbf{938}, 10 (\arxiv{2210.11180}) [\href{https://ui.adsabs.harvard.edu/abs/2022ApJ...938...10F}{4 citations}]

\item[{\color{numcolor}\scriptsize85}] Astropy Collaboration; Price-Whelan, Adrian M.; Lim, Pey Lian; Earl, Nicholas; \etal\ (incl.\ \textbf{DFM}), 2022, \doi{10.3847/1538-4357/ac7c74}{The Astropy Project: Sustaining and Growing a Community-oriented Open-source Project and the Latest Major Release (v5.0) of the Core Package}, The Astrophysical Journal, \textbf{935}, 167 (\arxiv{2206.14220}) [\href{https://ui.adsabs.harvard.edu/abs/2022ApJ...935..167A}{1784 citations}]
\item[{\color{numcolor}\scriptsize85}] Astropy Collaboration; Price-Whelan, Adrian M.; Lim, Pey Lian; Earl, Nicholas; \etal\ (incl.\ \textbf{DFM}), 2022, \doi{10.3847/1538-4357/ac7c74}{The Astropy Project: Sustaining and Growing a Community-oriented Open-source Project and the Latest Major Release (v5.0) of the Core Package}, The Astrophysical Journal, \textbf{935}, 167 (\arxiv{2206.14220}) [\href{https://ui.adsabs.harvard.edu/abs/2022ApJ...935..167A}{1789 citations}]

\item[{\color{numcolor}\scriptsize84}] Luger, Rodrigo; Agol, Eric; Bartoli{\'c}, Fran; \& \textbf{Foreman-Mackey, Daniel}, 2022, \doi{10.3847/1538-3881/ac4017}{Analytic Light Curves in Reflected Light: Phase Curves, Occultations, and Non-Lambertian Scattering for Spherical Planets and Moons}, The Astronomical Journal, \textbf{164}, 4 (\arxiv{2103.06275}) [\href{https://ui.adsabs.harvard.edu/abs/2022AJ....164....4L}{11 citations}]

Expand Down Expand Up @@ -74,7 +74,7 @@

\item[{\color{numcolor}\scriptsize67}] Hitchcock, James A.; Hundertmark, Markus; \textbf{Foreman-Mackey, Daniel}; Bachelet, Etienne; \etal, 2021, \doi{10.1093/mnras/stab1114}{PyTorchDIA: a flexible, GPU-accelerated numerical approach to Difference Image Analysis}, Monthly Notices of the Royal Astronomical Society, \textbf{504}, 3561 (\arxiv{2104.13715}) [\href{https://ui.adsabs.harvard.edu/abs/2021MNRAS.504.3561H}{5 citations}]

\item[{\color{numcolor}\scriptsize66}] \textbf{Foreman-Mackey, Daniel}; Luger, Rodrigo; Agol, Eric; Barclay, Thomas; \etal, 2021, \doi{10.21105/joss.03285}{exoplanet: Gradient-based probabilistic inference for exoplanet data {\&} other astronomical time series}, The Journal of Open Source Software, \textbf{6}, 3285 (\arxiv{2105.01994}) [\href{https://ui.adsabs.harvard.edu/abs/2021JOSS....6.3285F}{149 citations}]
\item[{\color{numcolor}\scriptsize66}] \textbf{Foreman-Mackey, Daniel}; Luger, Rodrigo; Agol, Eric; Barclay, Thomas; \etal, 2021, \doi{10.21105/joss.03285}{exoplanet: Gradient-based probabilistic inference for exoplanet data {\&} other astronomical time series}, The Journal of Open Source Software, \textbf{6}, 3285 (\arxiv{2105.01994}) [\href{https://ui.adsabs.harvard.edu/abs/2021JOSS....6.3285F}{150 citations}]

\item[{\color{numcolor}\scriptsize65}] David, Trevor J.; Contardo, Gabriella; Sandoval, Angeli; Angus, Ruth; \etal\ (incl.\ \textbf{DFM}), 2021, \doi{10.3847/1538-3881/abf439}{Evolution of the Exoplanet Size Distribution: Forming Large Super-Earths Over Billions of Years}, The Astronomical Journal, \textbf{161}, 265 (\arxiv{2011.09894}) [\href{https://ui.adsabs.harvard.edu/abs/2021AJ....161..265D}{41 citations}]

Expand Down Expand Up @@ -146,9 +146,9 @@

\item[{\color{numcolor}\scriptsize31}] \textbf{Foreman-Mackey, Daniel}; Agol, Eric; Ambikasaran, Sivaram; \& Angus, Ruth, 2017, \doi{10.3847/1538-3881/aa9332}{Fast and Scalable Gaussian Process Modeling with Applications to Astronomical Time Series}, The Astronomical Journal, \textbf{154}, 220 (\arxiv{1703.09710}) [\href{https://ui.adsabs.harvard.edu/abs/2017AJ....154..220F}{626 citations}]

\item[{\color{numcolor}\scriptsize30}] Montet, Benjamin T.; Tovar, Guadalupe; \& \textbf{Foreman-Mackey, Daniel}, 2017, \doi{10.3847/1538-4357/aa9e00}{Long-term Photometric Variability in Kepler Full-frame Images: Magnetic Cycles of Sun-like Stars}, The Astrophysical Journal, \textbf{851}, 116 (\arxiv{1705.07928}) [\href{https://ui.adsabs.harvard.edu/abs/2017ApJ...851..116M}{81 citations}]
\item[{\color{numcolor}\scriptsize30}] Grunblatt, Samuel K.; Huber, Daniel; Gaidos, Eric; Lopez, Eric D.; \etal\ (incl.\ \textbf{DFM}), 2017, \doi{10.3847/1538-3881/aa932d}{Seeing Double with K2: Testing Re-inflation with Two Remarkably Similar Planets around Red Giant Branch Stars}, The Astronomical Journal, \textbf{154}, 254 (\arxiv{1706.05865}) [\href{https://ui.adsabs.harvard.edu/abs/2017AJ....154..254G}{69 citations}]

\item[{\color{numcolor}\scriptsize29}] Grunblatt, Samuel K.; Huber, Daniel; Gaidos, Eric; Lopez, Eric D.; \etal\ (incl.\ \textbf{DFM}), 2017, \doi{10.3847/1538-3881/aa932d}{Seeing Double with K2: Testing Re-inflation with Two Remarkably Similar Planets around Red Giant Branch Stars}, The Astronomical Journal, \textbf{154}, 254 (\arxiv{1706.05865}) [\href{https://ui.adsabs.harvard.edu/abs/2017AJ....154..254G}{69 citations}]
\item[{\color{numcolor}\scriptsize29}] Montet, Benjamin T.; Tovar, Guadalupe; \& \textbf{Foreman-Mackey, Daniel}, 2017, \doi{10.3847/1538-4357/aa9e00}{Long-term Photometric Variability in Kepler Full-frame Images: Magnetic Cycles of Sun-like Stars}, The Astrophysical Journal, \textbf{851}, 116 (\arxiv{1705.07928}) [\href{https://ui.adsabs.harvard.edu/abs/2017ApJ...851..116M}{81 citations}]

\item[{\color{numcolor}\scriptsize28}] Luger, Rodrigo; \textbf{Foreman-Mackey, Daniel}; \& Hogg, David W., 2017, \doi{10.3847/2515-5172/aa96b5}{Linear Models for Systematics and Nuisances}, Research Notes of the American Astronomical Society, \textbf{1}, 7 (\arxiv{1710.11136}) [\href{https://ui.adsabs.harvard.edu/abs/2017RNAAS...1....7L}{17 citations}]

Expand Down Expand Up @@ -202,6 +202,6 @@

\item[{\color{numcolor}\scriptsize3}] Brewer, Brendon J.; \textbf{Foreman-Mackey, Daniel}; \& Hogg, David W., 2013, \doi{10.1088/0004-6256/146/1/7}{Probabilistic Catalogs for Crowded Stellar Fields}, The Astronomical Journal, \textbf{146}, 7 (\arxiv{1211.5805}) [\href{https://ui.adsabs.harvard.edu/abs/2013AJ....146....7B}{40 citations}]

\item[{\color{numcolor}\scriptsize2}] \textbf{Foreman-Mackey, Daniel}; Hogg, David W.; Lang, Dustin; \& Goodman, Jonathan, 2013, \doi{10.1086/670067}{emcee: The MCMC Hammer}, Publications of the Astronomical Society of the Pacific, \textbf{125}, 306 (\arxiv{1202.3665}) [\href{https://ui.adsabs.harvard.edu/abs/2013PASP..125..306F}{9337 citations}]
\item[{\color{numcolor}\scriptsize2}] \textbf{Foreman-Mackey, Daniel}; Hogg, David W.; Lang, Dustin; \& Goodman, Jonathan, 2013, \doi{10.1086/670067}{emcee: The MCMC Hammer}, Publications of the Astronomical Society of the Pacific, \textbf{125}, 306 (\arxiv{1202.3665}) [\href{https://ui.adsabs.harvard.edu/abs/2013PASP..125..306F}{9340 citations}]

\item[{\color{numcolor}\scriptsize1}] Weisz, Daniel R.; Fouesneau, Morgan; Hogg, David W.; Rix, Hans-Walter; \etal\ (incl.\ \textbf{DFM}), 2013, \doi{10.1088/0004-637X/762/2/123}{The Panchromatic Hubble Andromeda Treasury. IV. A Probabilistic Approach to Inferring the High-mass Stellar Initial Mass Function and Other Power-law Functions}, The Astrophysical Journal, \textbf{762}, 123 (\arxiv{1211.6105}) [\href{https://ui.adsabs.harvard.edu/abs/2013ApJ...762..123W}{34 citations}]
4 changes: 2 additions & 2 deletions tex/pubs_select.tex
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@@ -1,4 +1,4 @@
\item[{\color{numcolor}\scriptsize7}] \textbf{Foreman-Mackey, Daniel}; Luger, Rodrigo; Agol, Eric; Barclay, Thomas; \etal, 2021, \doi{10.21105/joss.03285}{exoplanet: Gradient-based probabilistic inference for exoplanet data {\&} other astronomical time series}, The Journal of Open Source Software, \textbf{6}, 3285 (\arxiv{2105.01994}) [\href{https://ui.adsabs.harvard.edu/abs/2021JOSS....6.3285F}{149 citations}]
\item[{\color{numcolor}\scriptsize7}] \textbf{Foreman-Mackey, Daniel}; Luger, Rodrigo; Agol, Eric; Barclay, Thomas; \etal, 2021, \doi{10.21105/joss.03285}{exoplanet: Gradient-based probabilistic inference for exoplanet data {\&} other astronomical time series}, The Journal of Open Source Software, \textbf{6}, 3285 (\arxiv{2105.01994}) [\href{https://ui.adsabs.harvard.edu/abs/2021JOSS....6.3285F}{150 citations}]

\item[{\color{numcolor}\scriptsize6}] \textbf{Foreman-Mackey, Daniel}; Farr, Will; Sinha, Manodeep; Archibald, Anne; \etal, 2019, \doi{10.21105/joss.01864}{emcee v3: A Python ensemble sampling toolkit for affine-invariant MCMC}, The Journal of Open Source Software, \textbf{4}, 1864 (\arxiv{1911.07688}) [\href{https://ui.adsabs.harvard.edu/abs/2019JOSS....4.1864F}{191 citations}]

Expand All @@ -10,4 +10,4 @@

\item[{\color{numcolor}\scriptsize2}] Ambikasaran, Sivaram; \textbf{Foreman-Mackey, Daniel}; Greengard, Leslie; Hogg, David W.; \& O'Neil, Michael, 2016, \doi{10.1109/TPAMI.2015.2448083}{Fast Direct Methods for Gaussian Processes}, IEEE Transactions on Pattern Analysis and Machine Intelligence, \textbf{38}, 252 (\arxiv{1403.6015}) [\href{https://scholar.google.com/scholar?cites=7122560326210979193,5194420368165307096,3347404430934682534}{668 citations}]

\item[{\color{numcolor}\scriptsize1}] \textbf{Foreman-Mackey, Daniel}; Hogg, David W.; Lang, Dustin; \& Goodman, Jonathan, 2013, \doi{10.1086/670067}{emcee: The MCMC Hammer}, Publications of the Astronomical Society of the Pacific, \textbf{125}, 306 (\arxiv{1202.3665}) [\href{https://ui.adsabs.harvard.edu/abs/2013PASP..125..306F}{9337 citations}]
\item[{\color{numcolor}\scriptsize1}] \textbf{Foreman-Mackey, Daniel}; Hogg, David W.; Lang, Dustin; \& Goodman, Jonathan, 2013, \doi{10.1086/670067}{emcee: The MCMC Hammer}, Publications of the Astronomical Society of the Pacific, \textbf{125}, 306 (\arxiv{1202.3665}) [\href{https://ui.adsabs.harvard.edu/abs/2013PASP..125..306F}{9340 citations}]
2 changes: 1 addition & 1 deletion tex/pubs_summary.tex
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@@ -1 +1 @@
refereed: 104 / first author: 9 / citations: 20,890 / h-index: 46 (2024-08-25)
refereed: 104 / first author: 9 / citations: 20,899 / h-index: 46 (2024-08-26)
4 changes: 2 additions & 2 deletions tex/pubs_summary_macros.tex
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\newcommand{\pubsdate}{2024-08-25}
\newcommand{\pubsdate}{2024-08-26}
\newcommand{\pubsnumber}{104}
\newcommand{\pubscitations}{20,890}
\newcommand{\pubscitations}{20,899}
\newcommand{\pubshindex}{46}
2 changes: 1 addition & 1 deletion tex/repos.tex
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\item \href{https://github.com/google/jax}{{\bf jax}} --- 29612 stars / 2703 forks \\
\item \href{https://github.com/google/jax}{{\bf jax}} --- 29618 stars / 2703 forks \\
Composable transformations of Python+NumPy programs: differentiate, vectorize, JIT to GPU/TPU, and more \href{http://jax.readthedocs.io/}{[docs]}

\item \href{https://github.com/dfm/tinygp}{{\bf tinygp}} --- 283 stars / 23 forks \\
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