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robertprior-fixstars edited this page Apr 7, 2020 · 4 revisions

Welcome to the ExSeqProcessing wiki!

ExSeq requires input data file names to have a particular structure as described in Input Data Preparation.

For short examples of running the ExSequence pipeline see Quick Start for more customization see the Parameters or command line option pages.

To see what each stage does refer to the pages for each stage.

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Documentation

Quick Start

System Requirements

Input Data Preparation

Stages

Parameters

runPipeline Options

Example Dataset

Miscellaneous

Performance Profile
Example Batching
Summary Reporting (link to page) / Analysis (link to page) All of above would be bullet points but thought each folder with useful scripts in the repository would have its own page with example usages and descriptions for the files under the given directory. Unsure on this as haven't used anything under these directories directly myself (i.e not through runPipeline) apart from tests/perf-profile/summarize-stat-logs.sh. Should any of these have a separate page? Note have not made pages for this yet as not sure how many should be made or if this break down makes sense.
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