Move repository directory

.gitignore

@@ -19,14 +19,8 @@ __pycache__/
 # ignore Jupyter Notebooks
 /ipynb/
 
-# ignore REPOSITORIES
-example/repository/*.nc
-# exceptions
-!example/repository/co2_bg.nc
-!example/repository/ch4_bg.nc
-!example/repository/n2o_bg.nc
-!example/repository/resp_RF.nc
-!example/repository/resp_cont.nc
+# ignore repositories and input data
+example/input/*.nc
 tests/repository/*.*
 tests/repository/cache
 # exceptions

example/example.toml

@@ -9,12 +9,12 @@ inv = ["CO2", "H2O", "NOx", "distance"]
 # possible values: "NO", "NO2"
 nox = "NO"
 # Output / response species
-# possible values: "CO2", "H2O"
+# possible values: "CO2", "H2O", "cont"
 out = ["CO2", "H2O", "cont"]
 
 # Emission inventories                                                    
 [inventories]
-dir = "repository/"
+dir = "input/"
 files = [
     "emi_inv_2020.nc",
 #     "emi_inv_2030.nc",
@@ -42,7 +42,7 @@ concentrations = false
 
 # Time settings
 [time]
-dir = "repository/"
+dir = "../repository/"
 # Time range in years: t_start, t_end, step, (t_end not included)
 range = [2020, 2051, 1]
 # Time evolution of emissions
@@ -52,18 +52,20 @@ range = [2020, 2051, 1]
 
 # Background concentrations
 [background]
-CO2.file = "repository/co2_bg.nc"
+dir = "../repository/"
+CO2.file = "co2_bg.nc"
 CO2.scenario = "SSP2-4.5"
 #CO2.scenario = "SSP1-1.9"
 #CO2.scenario = "SSP4-6.0"
 #CO2.scenario = "SSP3-7.0"
-CH4.file = "repository/ch4_bg.nc"
+CH4.file = "ch4_bg.nc"
 CH4.scenario = "SSP2-4.5"
-N2O.file = "repository/n2o_bg.nc"
+N2O.file = "n2o_bg.nc"
 N2O.scenario = "SSP2-4.5"
 
 # Response options
 [responses]
+dir = "../repository/"
 CO2.response_grid = "0D"
 CO2.conc.method = "Sausen&Schumann"
 #CO2.rf.method = "IPCC_2001_1"       # IPCC 2001, Table 6.2 first row
@@ -72,13 +74,13 @@ CO2.conc.method = "Sausen&Schumann"
 CO2.rf.method = "Etminan_2016"      # Etminan et al. 2016
 
 H2O.response_grid = "2D"
-H2O.rf.file = "repository/resp_RF.nc"
+H2O.rf.file = "resp_RF.nc"
 CH4.response_grid = "2D"
-CH4.tau.file = "repository/resp_ch4.nc"
+CH4.tau.file = "resp_ch4.nc"
 CH4.rf.method = "Etminan_2016"
 
 cont.response_grid = "cont"
-cont.resp.file = "repository/resp_cont.nc"
+cont.resp.file = "resp_cont.nc"
 cont.G_comp = 0.04  # conventional: 0.04; hydrogen: 0.12 
 cont.eff_fac = 1.0  # efficiency factor compared to kerosene (1.0)
 cont.PMrel = 1.0  # relative PM emissions compared to kerosene (1.0)

openairclim/construct_conc.py

@@ -101,7 +101,8 @@ def interp_bg_conc(config, spec):
         dict: Dictionary with np.ndarray of interpolated concentrations,
             key is species
     """
-    inp_file = config["background"][spec]["file"]
+    dir_name = config["background"]["dir"]
+    inp_file = dir_name + config["background"][spec]["file"]
     scenario = config["background"][spec]["scenario"]
     conc = xr.load_dataset(inp_file)[scenario]
     conc_dict = {spec: conc}

openairclim/main.py

@@ -195,7 +195,7 @@ def run(file_name):
             cccov_tot_dict = oac.calc_cccov_tot(config, cccov_dict)
 
             # Calculate contrail RF
-            rf_cont_dict = oac.calc_cont_RF(config, cccov_tot_dict, inv_dict)
+            rf_cont_dict = oac.calc_cont_rf(config, cccov_tot_dict, inv_dict)
             oac.write_to_netcdf(
                 config, rf_cont_dict, result_type="RF", mode="a"
             )

openairclim/read_config.py

@@ -91,10 +91,13 @@ def check_config(config):
         response_files = []
         for spec in species_2d:
             resp_flag = False
+            resp_dir = config["responses"]["dir"]
             # At least one resp_type must be defined in config
-            for resp_type in ["conc", "rf", "tau"]:
+            for resp_type in ["conc", "rf", "tau", "resp"]:
                 try:
-                    filename = config["responses"][spec][resp_type]["file"]
+                    filename = (
+                        resp_dir + config["responses"][spec][resp_type]["file"]
+                    )
                     response_files.append(filename)
                     resp_flag = True
                 except KeyError:

openairclim/read_netcdf.py

@@ -208,8 +208,9 @@ def open_netcdf_from_config(config, section, species, resp_type):
     """
     xr_dict = {}
     section_dict = config[section]
+    dir_name = section_dict["dir"]
     for spec in species:
-        inp_file = section_dict[spec][resp_type]["file"]
+        inp_file = dir_name + section_dict[spec][resp_type]["file"]
         xr_dict[spec] = xr.load_dataset(inp_file)
     return xr_dict
 

utils/create_artificial_inventories.py

@@ -17,7 +17,7 @@
 # Number of samples in output emission inventory
 OUT_SIZE = 10000
 #
-OUT_PATH = "../example/repository/"
+OUT_PATH = "../example/input/"
 #
 # Coordinate ranges
 # lon, lat ranges in deg

utils/create_time_evolution.py

@@ -5,7 +5,7 @@
 import matplotlib.pyplot as plt
 
 # GENERAL CONSTANTS
-REPO_PATH = "../example/repository/"
+REPO_PATH = "../example/input/"
 
 # SCALING CONSTANTS
 SCALING_TIME = np.arange(1990, 2200, 1)