Update github CI workflow

# Update doc dependencies
# Update toolchain and github actions workflow
# Update pyproject.toml dependencies (+optional)
# Update ruff.lint configuration
# Generate pytest coverage report

.github/workflows/ci.yml

@@ -44,19 +44,18 @@ jobs:
       uses: actions/setup-python@v5
       with:
         python-version: 3.12
-    - name: Install libspatial
+    - name: Install libspatial, pyclipr dependencies
       run: |
         sudo apt-get update -y -qq
-        sudo apt-get install -qq -y libglu1-mesa libspatialindex6
+        sudo apt-get install -qq -y libglu1-mesa libspatialindex6 build-essential libeigen3-dev
     - name: Install dev dependencies
       run: |
         python -m pip install --upgrade pip
         pip install -U -e .[docs]
     - name: Build docs
       run: |
         cd docs
-        make html SPHINXOPTS="-W --keep-going"
-
+        sphinx-build --builder html . out
   test-builds:
     name: ${{ matrix.name }}
     runs-on: ${{ matrix.os }}
@@ -85,20 +84,51 @@ jobs:
       uses: actions/setup-python@v5
       with:
         python-version: ${{ matrix.pyversion }}
-    - name: Install libspatial
+    - name: Install libspatial and pyclipr dependencies
       if: matrix.os == 'ubuntu-latest'
       run: |
         sudo apt-get update -y -qq
-        sudo apt-get install -qq -y libglu1-mesa libspatialindex6
+        sudo apt-get install -qq -y libglu1-mesa libspatialindex6 build-essential libeigen3-dev
     - name: Install package and dev dependencies
       run: |
         python -m pip install --upgrade pip
+        pip install .
         pip install .[tests]
+        pip install .[support]
         rm -r pyslm
-    - name: Unit tests
+    - name: Unit tests with pytest
       run: |
-        pytest -v tests
-
+        pytest tests/
+  test-coverage:
+    name: Test Coverage
+    runs-on: ubuntu-latest
+    strategy:
+      fail-fast: false
+    steps:
+    - uses: actions/checkout@v4
+    - name: Set up Python
+      uses: actions/setup-python@v5
+      with:
+        python-version: 3.12
+    - name: Install libspatial and pyclipr dependencies
+      run: |
+        sudo apt-get update -y -qq
+        sudo apt-get install -qq -y libglu1-mesa libspatialindex6 build-essential libeigen3-dev
+    - name: Install package and dev dependencies
+      run: |
+        python -m pip install --upgrade pip
+        pip install .
+        pip install .[tests]
+        pip install .[support]
+        rm -r pyslm
+    - name: Run Pytest coverage
+      run: |
+        pytest --junitxml=pytest.xml --cov-report=term-missing:skip-covered --cov=pyslm tests/ | tee pytest-coverage.txt
+    - name: Pytest coverage comment
+      uses: MishaKav/pytest-coverage-comment@main
+      with:
+        pytest-coverage-path: ./pytest-coverage.txt
+        junitxml-path: ./pytest.xml
   test-examples-build:
     name: Test examples ${{ matrix.pyversion }}
     runs-on: ${{ matrix.os }}
@@ -116,10 +146,10 @@ jobs:
       uses: actions/setup-python@v5
       with:
         python-version: 3.12
-    - name: Install libspatial
+    - name: Install libspatial and pyclipr dependencies
       run: |
         sudo apt-get update -y -qq
-        sudo apt-get install -qq -y libglu1-mesa libspatialindex6
+        sudo apt-get install -qq -y libglu1-mesa libspatialindex6 build-essential libeigen3-dev
     - name: Install dev dependencies
       run: |
         python -m pip install --upgrade pip
@@ -139,10 +169,16 @@ jobs:
         uses: actions/setup-python@v5
         with:
           python-version: 3.12
+      - name: Install Hatch
+        uses: pypa/hatch@install
+      - name: Install libspatial and pyclipr dependencies
+        run: |
+          sudo apt-get update -y -qq
+          sudo apt-get install -qq -y libglu1-mesa libspatialindex6 build-essential libeigen3-dev
       - name: Install dev dependencies
         run: |
           python -m pip install --upgrade pip
-          pip install -U flit build twine
+          pip install -U flit build twine hatchling
       - name: Create source distribution
         run: |
           python -m build -n -s

pyproject.toml

@@ -50,15 +50,25 @@ docs = [
     "networkx",
     "numpy",
     "pyclipr",
+    "mapbox-earcut",
     "autodocsumm",
+    "sphinx-autodoc-typehints",
+    "m2r2",
+    "sphinx_automodapi",
     "scikit-image",
     "scipy",
     "shapely",
     "sphinx",
+    "docutils==0.20",
+    "mock",
     "sphinx-paramlinks",
     "pypandoc",
     "sphinx_rtd_theme",
+    "furo",
+    "triangle",
     "trimesh",
+    "vispy",
+    "PyQt5"
 ]
 easy = [
     "colorlog",
@@ -68,6 +78,11 @@ easy = [
     "triangle",
     "trimesh",
 ]
+tests = [
+    "pytest",
+    "pytest-cov",
+    "coverage-badge"
+]
 support = [
     "mapbox-earcut",
     "manifold3d",
@@ -119,7 +134,7 @@ testpaths = [
 
 [tool.ruff.lint]
 select = ["F", "E", "W", "N", "B", "RUF"]
-exclude = ["build/", "docs/",  "examples/", "tests/", "__pycache__", ".github"]
+exclude = ["setup.py", "build/*", "dist/*", "docs/*",  "examples/*", "tests/*", "__pycache__", ".github"]
 ignore = [
     "E501",   # Line too long
     "N802",   # Function name should be lowercase

pyslm/hatching/hatching.py

@@ -1,6 +1,6 @@
 import abc
 import time
-from typing import assert_never, Any, List, Optional, Tuple, Union
+from typing import Any, List, Optional, Tuple, Union
 import logging
 
 import numpy as np

tests/core/test_core.py

@@ -15,9 +15,6 @@ class TestBasic:
     NUM_ORIGINS = 10
     NUM_SCALEFACTORS = 10
 
-    def test_version(self):
-        assert pyslm.__version__ == '0.7.0'
-
     def test_vector_slicing_cube(self):
 
         # load the mesh into a pyslm Part
@@ -111,7 +108,7 @@ def test_vector_slicing_complex_path(self):
 
         # slice the part
         part = pyslm.Part('cube')
-        part.setGeometry('../../models/frameGuide.stl')
+        part.setGeometry('./models/frameGuide.stl')
 
         # slice the part
         polys = part.getVectorSlice(0.0, returnCoordPaths=False)
@@ -149,7 +146,7 @@ def test_bitmap_slicing_complex(self):
 
         # slice the part
         part = pyslm.Part('frameguide')
-        part.setGeometry('../../models/frameGuide.stl')
+        part.setGeometry('./models/frameGuide.stl')
 
         # slice the part
         polys = part.getVectorSlice(0.0, returnCoordPaths=False)