Issue/323 add line

java/edu/ucar/metviewer/MVPlotJob.java

@@ -228,6 +228,8 @@ public class MVPlotJob {
   protected double eqboundHigh = -0.001;
   protected Boolean isCircularBlockBootstrap = Boolean.TRUE;
 
+  protected List<LineAttributes> lines = new ArrayList<>();
+
 
   /**
    * Deep copy of the MVPlotJob, useful for inheritance.
@@ -434,6 +436,7 @@ public MVPlotJob copy() {
 
     job.eqboundLow = eqboundLow;
     job.eqboundHigh = eqboundHigh;
+    job.lines = new ArrayList<>(lines);
     return job;
   }
 
@@ -2245,6 +2248,14 @@ public void setCircularBlockBootstrap(Boolean addCircularBlockBootstrap) {
     isCircularBlockBootstrap = addCircularBlockBootstrap;
   }
 
+  public List<LineAttributes> getLines() {
+    return lines;
+  }
+
+  public void setLines(List<LineAttributes> lines) {
+    this.lines = lines;
+  }
+
   public Boolean getReverseX() {
     return isReverseX;
   }

java/edu/ucar/metviewer/MVPlotJobParser.java

@@ -814,7 +814,7 @@ public static StringBuilder serializeJob(MVPlotJob job, DatabaseInfo databaseInf
     xmlStr.append("</plot_fix>");
 
     //  agg_stat
-    if ((job.getAggCtc() || job.getAggSl1l2() || job.getAggSal1l2() || job.getAggPct()|| job.getAggMctc()
+    if ((job.getAggCtc() || job.getAggSl1l2() || job.getAggSal1l2() || job.getAggPct() || job.getAggMctc()
             || job.getAggNbrCnt() || job.getAggSsvar()
             || job.getAggVl1l2() || job.getAggGrad() || job.getAggEcnt())
             || job.isModeRatioJob()) {
@@ -908,7 +908,7 @@ public static StringBuilder serializeJob(MVPlotJob job, DatabaseInfo databaseInf
     if (job.getPlotTmpl().equals("ens_ss.R_tmpl")) {
       xmlStr.append(
               "<ensss_pts>" + job.getEnsSsPts() + "</ensss_pts>" +
-                      "<ensss_pts_disp>" + (job.getEnsSsPtsDisp() ? "TRUE" : "FALSE")+ "</ensss_pts_disp>");
+                      "<ensss_pts_disp>" + (job.getEnsSsPtsDisp() ? "TRUE" : "FALSE") + "</ensss_pts_disp>");
     }
 
     //taylor
@@ -1059,6 +1059,19 @@ public static StringBuilder serializeJob(MVPlotJob job, DatabaseInfo databaseInf
       xmlStr.append("<contour_intervals>" + job.getContourIntervals() + "</contour_intervals>");
     }
 
+    if (!job.getLines().isEmpty()) {
+      StringBuilder linesStr = new StringBuilder("<lines>");
+      for (LineAttributes lineAttributes : job.getLines()) {
+        linesStr.append("<line color=\"").append(lineAttributes.getColor()).append("\" line_pos=\"")
+                .append(lineAttributes.getPosition()).append("\"  lty=\"").append(lineAttributes.getLty())
+                .append("\" lwd=\"").append(lineAttributes.getLwd()).append("\" type=\"")
+                .append(lineAttributes.getType()).append("\"/>");
+      }
+      linesStr.append("</lines>");
+      xmlStr.append(linesStr);
+    }
+
+
     //  close the plot job
     xmlStr.append("</plot></plot_spec>");
     return xmlStr;
@@ -1263,6 +1276,7 @@ else if (node.tag.equals("plot")) {
         String strCompleteness = "";
         boolean boolPlotRun = !node.run.equalsIgnoreCase("false");
 
+
         if (job.getPlotTmpl().equals("roc.R_tmpl")) {
 
           //  ROC jobs must have an aggregation method selected
@@ -1376,7 +1390,7 @@ else if (node.tag.equals("indep")) {
         } else {
           String[][] listIndy = parseIndyNode(node, "");
           int size = listIndy[0].length;
-          if(listIndy[2].length < size) {
+          if (listIndy[2].length < size) {
             String[] newListIndy = new String[size];
             for (int j = 0; j < size; j++) {
               if (j < listIndy[2].length) {
@@ -1769,8 +1783,8 @@ else if (node.tag.equals("agg_stat")) {
           if (nodeAggStat.tag.equals("agg_ctc")) {
             job.setAggCtc(val);
           } else if (nodeAggStat.tag.equals("agg_mctc")) {
-            job.setAggMctc(val);}
-          else if (nodeAggStat.tag.equals("agg_nbrctc")) {
+            job.setAggMctc(val);
+          } else if (nodeAggStat.tag.equals("agg_nbrctc")) {
             job.setAggNbrCtc(val);
           } else if (nodeAggStat.tag.equals("agg_sl1l2")) {
             job.setAggSl1l2(val);
@@ -1913,6 +1927,28 @@ else if (node.tag.equals("normalized_histogram")) {
         job.setNormalizedHistogram(node.value.equalsIgnoreCase("true"));
 
       }
+      //  <lines>
+      else if (node.tag.equals("lines") && node.children.length > 0) {
+        List<LineAttributes> lines = new ArrayList<>();
+        for (int j = 0; j < node.children.length; j++) {
+          MVNode lineNode = node.children[j];
+          if (lineNode.tag.equals("line")) {
+            LineAttributes lineAttributes = new LineAttributes();
+            try {
+              lineAttributes.setColor(lineNode.getAttribute("color"));
+              lineAttributes.setLty(lineNode.getAttribute("lty"));
+              lineAttributes.setLwd(lineNode.getAttribute("lwd"));
+              lineAttributes.setPosition(lineNode.getAttribute("line_pos"));
+              lineAttributes.setType(lineNode.getAttribute("type"));
+            } catch (Exception e) {
+              logger.error("One of the lin's attribute is invalid or missing");
+            }
+            lines.add(lineAttributes);
+          }
+        }
+        job.setLines(lines);
+
+      }
 
 
       //  boolean format settings

java/edu/ucar/metviewer/jobManager/BarJobManager.java

@@ -8,6 +8,6 @@ public BarJobManager(MVBatch mvBatch) {
   }
   @Override
   protected String getPythonScript() {
-    return "/plots/bar/bar.py";
+    return "/metplotpy/plots/bar/bar.py";
   }
 }

java/edu/ucar/metviewer/jobManager/BoxJobManager.java

@@ -8,6 +8,6 @@ public BoxJobManager(MVBatch mvBatch) {
   }
   @Override
   protected String getPythonScript() {
-    return "/plots/box/box.py";
+    return "/metplotpy/plots/box/box.py";
   }
 }

java/edu/ucar/metviewer/jobManager/ContourJobManager.java

@@ -58,6 +58,6 @@ protected Map<String, Object> createYamlInfoMap(MVPlotJob job) throws Validation
   }
     @Override
   protected String getPythonScript() {
-    return "/plots/contour/contour.py";
+    return "/metplotpy/plots/contour/contour.py";
   }
 }

java/edu/ucar/metviewer/jobManager/EclvJobManager.java

@@ -158,6 +158,6 @@ protected void run(MVPlotJob job) throws ValidationException, ParseException, IO
   }
   @Override
   protected String getPythonScript() {
-    return "/plots/eclv/eclv.py";
+    return "/metplotpy/plots/eclv/eclv.py";
   }
 }

java/edu/ucar/metviewer/jobManager/EnsSsJobManager.java

@@ -34,6 +34,6 @@ protected void validateNumDepSeries(MVPlotJob job, int intNumDepSeries) {
   }
   @Override
   protected String getPythonScript() {
-    return "/plots/ens_ss/ens_ss.py";
+    return "/metplotpy/plots/ens_ss/ens_ss.py";
   }
 }

java/edu/ucar/metviewer/jobManager/EtbJobManager.java

@@ -12,7 +12,7 @@ public EtbJobManager(MVBatch mvBatch) {
   }
   @Override
   protected String getPythonScript() {
-    return "/plots/equivalence_testing_bounds/equivalence_testing_bounds.py";
+    return "/metplotpy/plots/equivalence_testing_bounds/equivalence_testing_bounds.py";
   }
 
   @Override

java/edu/ucar/metviewer/jobManager/JobManager.java

@@ -12,14 +12,7 @@
 import java.util.*;
 import java.util.regex.Matcher;
 
-import edu.ucar.metviewer.DatabaseException;
-import edu.ucar.metviewer.MVBatch;
-import edu.ucar.metviewer.MVDataTable;
-import edu.ucar.metviewer.MVOrderedMap;
-import edu.ucar.metviewer.MVPlotJob;
-import edu.ucar.metviewer.MVUtil;
-import edu.ucar.metviewer.StopWatchException;
-import edu.ucar.metviewer.ValidationException;
+import edu.ucar.metviewer.*;
 
 /**
  * @author : tatiana $
@@ -541,6 +534,20 @@ protected Map<String, Object> createYamlInfoMap(MVPlotJob job) throws Validation
     yamlInfo.put("cl_step", 0.05);
     yamlInfo.put("equalize_by_indep", job.getEqualizeByIndep() ? "True" : "False");
 
+    if(!job.getLines().isEmpty()){
+      List <Map<String, Object>> linesList = new ArrayList<>();
+      for (LineAttributes lineAttributes : job.getLines()){
+        Map<String, Object> line = new HashMap<>();
+        line.put("type", lineAttributes.getType());
+        line.put("line_style", linesRtoPython.get(lineAttributes.getLty()));
+        line.put("line_width", lineAttributes.getLwd());
+        line.put("color", lineAttributes.getColor());
+        line.put("position", lineAttributes.getPosition());
+        linesList.add(line);
+      }
+      yamlInfo.put("lines", linesList);
+    }
+
     return yamlInfo;
   }
 

java/edu/ucar/metviewer/jobManager/PerformanceJobManager.java

@@ -29,7 +29,7 @@ protected int getNumberPlotCurves(Map.Entry[] listDep1Plot) {
 
   @Override
   protected String getPythonScript() {
-    return "/plots/performance_diagram/performance_diagram.py";
+    return "/metplotpy/plots/performance_diagram/performance_diagram.py";
   }
   @Override
   protected  Map<String, Object> addPlotConfigs(Map<String, Object> yamlInfo, MVPlotJob job, int intNumDepSeries) throws ValidationException {

java/edu/ucar/metviewer/jobManager/PhistJobManager.java

@@ -23,6 +23,6 @@ public PhistJobManager(MVBatch mvBatch) {
   }
   @Override
   protected String getPythonScript() {
-    return "/plots/histogram/prob_hist.py";
+    return "/metplotpy/plots/histogram/prob_hist.py";
   }
 }

java/edu/ucar/metviewer/jobManager/RelpJobManager.java

@@ -23,6 +23,6 @@ public RelpJobManager(MVBatch mvBatch) {
   }
   @Override
   protected String getPythonScript() {
-    return "/plots/histogram/rel_hist.py";
+    return "/metplotpy/plots/histogram/rel_hist.py";
   }
 }

java/edu/ucar/metviewer/jobManager/RelyJobManager.java

@@ -166,7 +166,7 @@ protected void run(MVPlotJob job) throws ParseException, ValidationException, IO
 
   @Override
   protected String getPythonScript() {
-    return "/plots/reliability_diagram/reliability.py";
+    return "/metplotpy/plots/reliability_diagram/reliability.py";
   }
 
 }

java/edu/ucar/metviewer/jobManager/RhistJobManager.java

@@ -137,7 +137,7 @@ protected void run(MVPlotJob job) throws ParseException, ValidationException, IO
   }
   @Override
   protected String getPythonScript() {
-    return "/plots/histogram/rank_hist.py";
+    return "/metplotpy/plots/histogram/rank_hist.py";
   }
 
 }

java/edu/ucar/metviewer/jobManager/RocJobManager.java

@@ -100,7 +100,7 @@ protected void run(MVPlotJob job) throws ParseException, ValidationException, IO
 
   @Override
   protected String getPythonScript() {
-    return "/plots/roc_diagram/roc_diagram.py";
+    return "/metplotpy/plots/roc_diagram/roc_diagram.py";
   }
 
 }

java/edu/ucar/metviewer/jobManager/SeriesJobManager.java

@@ -283,7 +283,7 @@ protected void run(MVPlotJob job) throws ParseException, ValidationException, IO
 
   @Override
   protected String getPythonScript() {
-    return "/plots/line/line.py";
+    return "/metplotpy/plots/line/line.py";
   }
 
 

java/edu/ucar/metviewer/jobManager/TaylorJobManager.java

@@ -46,7 +46,7 @@ protected int getNumberPlotCurves(Map.Entry[] listDep1Plot) {
   }
   @Override
   protected String getPythonScript() {
-    return "/plots/taylor_diagram/taylor_diagram.py";
+    return "/metplotpy/plots/taylor_diagram/taylor_diagram.py";
   }
 
   @Override