lungmap-scratch

anything anyone wants to work on

Environments

Native - On my machine

To complete all work, I'm unsing Anaconda python with the following descritpors:

platform : osx-64 conda version : 4.1.0 conda-build version : 1.19.0 python version : 3.5.1.final.0 requests version : 2.10.0

With this native Anaconda install, I create a Conda environment just for this project, called opencv3. To recreate this environment, follow these steps:

#Python 3 and openCV3
conda create -n opencv3 numpy scipy scikit-learn matplotlib python=3
source activate opencv3
conda install -c https://conda.binstar.org/menpo opencv3
conda install -c conda-forge tensorflow
conda install spyder

Note: I don't use the usual conda install library due to this issue.

Jupyter

Using the Dockerfile in this repository, you can recreate our Jupyter environment that we are using, which is being hosted here (TBD). To create this environment, follow these commands.

docker build -t jupyter/lungmap . docker run -d -p 8888:8888 jupyter/lunmap Note, if you need to mount a volume it should be done as follow: docker run -d -p 8888:8888 -v $(pwd)/notebooks:/home/jovyan/work jupyter/lunmap