Doc:added documentation for SMOKE

docs/source/software/applications/SMOKE/4.8.1/index.rst

@@ -60,19 +60,19 @@ Set your SMK_HOME directory for the installation and load libraries.
 
         setenv SMK_HOME $cwd
 
-        $ module load gcc/9.3.0
-        $ module load mpich/3.4.2_gcc-9.3.0
-        $ module load zlib/1.2.11_gcc-9.3.0
-        $ module load curl/7.77.0_gcc-9.3.0
-        $ module load netcdf-fortran/4.5.3_gcc-9.3.0_disable-netcdf-4
+        module load gcc/9.3.0
+        module load mpich/3.4.2_gcc-9.3.0
+        module load zlib/1.2.11_gcc-9.3.0
+        module load curl/7.77.0_gcc-9.3.0
+        module load netcdf-fortran/4.5.3_gcc-9.3.0_disable-netcdf-4
 
 
 
 unzip all files with the provided script.
 
     .. code-block:: tcsh
 
-        source smoke_install.csh
+        source smoke_install_v481.csh
 
 The script will point the possible problems that may arise.
 
@@ -86,19 +86,24 @@ Create the ioapi folder to make the symbolic link to the already compiled ioapi.
 
         cd ioapi/ioapi
 
-        ln -s <ioapi_path>/* .
+        ln -s /home/<user>/ioapi/ioapi/* .
 
-After linking the ioapi folder, we need to link all the files in the lib
-folder to the Linux2_x86_64gfort folder.
+After linking the ioapi folder, we need to link all the files in the Linux2_x86_64gfort folder.
 
     .. code-block:: tcsh
 
-        cd <ioapi_path>/Linux2_x86_64gfort
+        mkdir $SMK_HOME/subsys/ioapi/Linux2_x86_64gfort/
 
-        ln -s <ioapi_path>/lib/* .
+        cd $SMK_HOME/subsys/ioapi/Linux2_x86_64gfort/
+
+        ln -s /home/<user>/ioapi/Linux2_x86_64gfort/* .
 
 After creating the links change the line 25 in of the file in the following path $SMK_HOME/subsys/smoke/assigns/ASSIGNS.nctox.cmaq.cb05_soa.us12-nc
 
+    .. code-block:: tcsh
+
+        vim $SMK_HOME/subsys/smoke/assigns/ASSIGNS.nctox.cmaq.cb05_soa.us12-nc
+
 Change
 
     .. code-block:: tcsh
@@ -113,10 +118,29 @@ to
 
 so that the compilation uses the gfort compiler.
 
+    .. code-block:: tcsh
+
+        cd $SMK_HOME/subsys/smoke/assigns/
+
+        source ASSIGNS.nctox.cmaq.cb05_soa.us12-nc
+
+Now we need to go to the build directory, open the Makeinclude file, comment lines 48 and 53, and uncomment lines 49 and 54
+
+    .. code-block:: tcsh
+
+        vim $SMK_HOME/subsys/smoke/src/Makeinclude
+
 After that, compile.
 
     .. code-block:: tcsh
 
         cd $SMK_HOME/subsys/smoke/src
 
         make
+
+If everything is correctly configured and the necessary modules are loaded you will get two types of errors
+
+    1. error: enclosing 'parallel'; With this error you should enter in the file where the error has occurred and before the error line, you should comment the line where it says default none with 'c...............'.
+    2. error:can't convert CHARACTER(1) TO INTEGER(4) at (1); in the error line where it says LFIP = '' change the quotation marks by a zero.
+
+After correcting the errors all executables should be created, and the compilation should be complete.