Merge pull request #49 from eastgenomics/NG-298_v2.3.3

Updated CEN VEP config to v1.1.9 (#49)
eastgenomics · Nov 23, 2023 · 3afc0a1 · 3afc0a1
2 parents dbee186 + 89311c3
commit 3afc0a1
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Showing 2 changed files with 4 additions and 4 deletions.
diff --git a/README.md b/README.md
@@ -34,7 +34,7 @@ Dynamic files:
 | genes2transcripts | **230421_g2t.tsv** | `file-GV4P970433Gj6812zGVBZvB4` |
 | exons_nirvana | **GCF_000001405.25_GRCh37.p13_genomic.exon_5bp_v2.0.0.tsv** | `file-GF611Z8433Gk7gZ47gypK7ZZ` |
 | exons_file for eggd_athena | **GCF_000001405.25_GRCh37.p13_genomic.symbols.exon_5bp_v2.0.0.tsv** | `file-GF611Z8433Gf99pBPbJkV7bq` |
-| cen_vep_config for SNV reports | **cen_vep_config_v1.1.8.json** | `file-GZk4f284z6jBp0Zqq9JFJBJ8` |
+| cen_vep_config for SNV reports | **cen_vep_config_v1.1.9.json** | `file-GbPYpkQ4z6jBQxkqYBF32821` |
 | cen_vep_config for CNV reports | **cen-cnv_config_v1.1.0.json** | `file-GQGJ3Z84xyx0jp1q65K1Q1jY` |
 | additional_regions for CNVs | **CEN_CNV_additional_regions_b37_v1.0.1.tsv** | `file-GJZQvg0433GkyFZg13K6VV6p` |
 | gatk_docker | **GATK_v4.2.5.0.tar.gz** | `file-GBBP9JQ433GxV97xBpQkzYZx` |

diff --git a/egg5_config_v2.3.2.py → egg5_config_v2.3.3.py b/egg5_config_v2.3.2.py → egg5_config_v2.3.3.py
@@ -1,5 +1,5 @@
 assay_name = "CEN" # Core Endo Neuro
-assay_version = "v2.3.2"
+assay_version = "v2.3.3"
 
 ref_project_id = "project-Fkb6Gkj433GVVvj73J7x8KbV"
 
@@ -21,8 +21,8 @@
 exons_file = "{}:file-GF611Z8433Gf99pBPbJkV7bq".format(ref_project_id)
 
 ## for eggd_VEP
-# VEP config file for SNV reports v1.1.8
-vep_config = "{}:file-GZk4f284z6jBp0Zqq9JFJBJ8".format(ref_project_id)
+# VEP config file for SNV reports v1.1.9
+vep_config = "{}:file-GbPYpkQ4z6jBQxkqYBF32821".format(ref_project_id)
 # VEP config file for CNV reports v1.1.0
 cnv_vep_config =  "{}:file-GQGJ3Z84xyx0jp1q65K1Q1jY".format(ref_project_id)