start tests #3
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| name: pytest | |
| on: [push, pull_request] | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Set up Python 3.8 | |
| uses: actions/setup-python@v1 | |
| with: | |
| python-version: 3.8 | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install pipenv codecov pytest pytest-cov pytest-mock pytest-subtests | |
| pip install -r requirements.txt | |
| pipenv install --dev | |
| - name: Install bedtools | |
| run: | | |
| wget https://github.com/arq5x/bedtools2/releases/download/v2.31.0/bedtools.static | |
| mv bedtools.static.binary /usr/bin/bedtools | |
| chmod a+x /usr/bin/bedtools | |
| - name: Test with pytest | |
| run: | | |
| pytest -vv --cov . |