update pytest workflow

eastgenomics · Sep 19, 2024 · 8bf1c93 · 8bf1c93
1 parent 5221ac4
commit 8bf1c93
Showing 1 changed file with 5 additions and 0 deletions.
diff --git a/.github/workflows/pytest.yml b/.github/workflows/pytest.yml
@@ -16,6 +16,11 @@ jobs:
         pip install pipenv codecov pytest pytest-cov pytest-mock pytest-subtests
         pip install -r requirements.txt
         pipenv install --dev
+    - name: Install bedtools
+      run: |
+        wget https://github.com/arq5x/bedtools2/releases/download/v2.31.0/bedtools.static
+        mv bedtools.static.binary /usr/bin/bedtools
+        chmod a+x /usr/bin/bedtools
     - name: Test with pytest
       run: |
         pytest -vv --cov .