Skip to content

v2.0.0

Latest
Compare
Choose a tag to compare
@jethror1 jethror1 released this 27 Sep 08:38
69c0fff

Summary

Refactor of original app to fix multiple issues and bring up to standard

Changes

  • Rewrite from Bash app to Python
  • Add full unit tests
  • Correct values calculated:
    • Remove alternate heterozygous variants and non autosome variants from the mean het and het:hom calculations
    • Ensure duplicate variants are excluded from the bedtools intersect
    • Correct label of X het:hom ratio
    • Correct for calculating of alternate depth by correct indexing
  • Fix errors in app for our standards
  • Remove external dependencies