{bio}[foss/2023a] dorado v0.7.0 w/ CUDA 12.1.1

[boegel]

(created using eb --new-pr)

requires patch file & deps from:

• {bio}[foss/2023a] dorado v0.6.1, kineto v0.4.0 w/ CUDA 12.1.1 #20444

resolves vscentrum/vsc-software-stack#360

[boegel]

Test report by @boegel
FAILED
Build succeeded for 0 out of 1 (1 easyconfigs in total)
node3304.joltik.os - Linux RHEL 8.8, x86_64, Intel(R) Xeon(R) Gold 6242 CPU @ 2.80GHz (cascadelake), 1 x NVIDIA Tesla V100-SXM2-32GB, 545.23.08, Python 3.6.8
See https://gist.github.com/boegel/9592ccb103f50e1b45c31178af4c6f08 for a full test report.

[verdurin]

Test report by @verdurin
FAILED
Build succeeded for 0 out of 1 (1 easyconfigs in total)
easybuild-c7.novalocal - Linux CentOS Linux 7.9.2009, x86_64, Intel Xeon Processor (Skylake, IBRS), Python 3.6.8
See https://gist.github.com/verdurin/2a9262a9a63d8127de8795dbdb235b72 for a full test report.

[pavelToman]

@boegel could you add the dorado-0.6.1_include-fstream.patch to this PR?
It could resolve vscentrum/vsc-software-stack#360

[boegel]

@boegel could you add the dorado-0.6.1_include-fstream.patch to this PR? It could resolve vscentrum/vsc-software-stack#360

The idea is to get #20444 merged first, and then the patch will be available through the develop branch.

[boegel]

@boegel could you add the dorado-0.6.1_include-fstream.patch to this PR? It could resolve vscentrum/vsc-software-stack#360

The idea is to get #20444 merged first, and then the patch will be available through the develop branch.

But since #20444 is kinda stuck, I've copied the patch here too, via 17b525f

[pavelToman]

@boegelbot please test @ generoso

[boegelbot]

@pavelToman: Request for testing this PR well received on login1

PR test command 'EB_PR=20596 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs /opt/software/slurm/bin/sbatch --job-name test_PR_20596 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

• exit code: 0
• output:

Submitted batch job 14024

Test results coming soon (I hope)...

- notification for comment with ID 2271178401 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

[boegelbot]

Test report by @boegelbot
FAILED
Build succeeded for 0 out of 1 (1 easyconfigs in total)
cns2 - Linux Rocky Linux 8.9, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/boegelbot/9b27f7e5e7d82c95efd053b16fc6c753 for a full test report.

[pavelToman]

@boegelbot please test @ generoso

[boegelbot]

@pavelToman: Request for testing this PR well received on login1

PR test command 'EB_PR=20596 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs /opt/software/slurm/bin/sbatch --job-name test_PR_20596 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

• exit code: 0
• output:

Submitted batch job 14096

Test results coming soon (I hope)...

- notification for comment with ID 2299081861 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

[boegelbot]

Test report by @boegelbot
FAILED
Build succeeded for 0 out of 1 (1 easyconfigs in total)
cns1 - Linux Rocky Linux 8.9, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/boegelbot/a1e5d67967b65ec03a69f60217e1d741 for a full test report.

[boegel]

@boegelbot please test @ generoso

[boegelbot]

@boegel: Request for testing this PR well received on login1

PR test command 'EB_PR=20596 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs /opt/software/slurm/bin/sbatch --job-name test_PR_20596 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

• exit code: 0
• output:

Submitted batch job 14103

Test results coming soon (I hope)...

- notification for comment with ID 2299734880 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

[boegelbot]

Test report by @boegelbot
FAILED
Build succeeded for 0 out of 1 (1 easyconfigs in total)
cns2 - Linux Rocky Linux 8.9, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/boegelbot/1e883b8e4742dfc921b86aad8225baf3 for a full test report.

[pavelToman]

The patch from dorado 0.6.1 will not works I think, the duplex.cpp is a little bit different
EDIT: patch from dorado-0.7.3 can work