{bio}[GCC/12.3.0,gompi/2023a] Bio-SearchIO-hmmer v1.7.3, prokka v1.14.5

[verdurin]

(created using eb --new-pr)

[github-actions]

Updated software Bio-SearchIO-hmmer-1.7.3-GCC-12.3.0.eb

Diff against Bio-SearchIO-hmmer-1.7.3-GCC-12.2.0.eb

easybuild/easyconfigs/b/Bio-SearchIO-hmmer/Bio-SearchIO-hmmer-1.7.3-GCC-12.2.0.eb

diff --git a/easybuild/easyconfigs/b/Bio-SearchIO-hmmer/Bio-SearchIO-hmmer-1.7.3-GCC-12.2.0.eb b/easybuild/easyconfigs/b/Bio-SearchIO-hmmer/Bio-SearchIO-hmmer-1.7.3-GCC-12.3.0.eb
index d21b8fbf38..8c8af50568 100644
--- a/easybuild/easyconfigs/b/Bio-SearchIO-hmmer/Bio-SearchIO-hmmer-1.7.3-GCC-12.2.0.eb
+++ b/easybuild/easyconfigs/b/Bio-SearchIO-hmmer/Bio-SearchIO-hmmer-1.7.3-GCC-12.3.0.eb
@@ -7,14 +7,14 @@ homepage = 'https://metacpan.org/pod/Bio::SearchIO::hmmer3'
 description = """Code to parse output from hmmsearch, hmmscan, phmmer and nhmmer, compatible
 with both version 2 and version 3 of the HMMER package from http://hmmer.org."""
 
-toolchain = {'name': 'GCC', 'version': '12.2.0'}
+toolchain = {'name': 'GCC', 'version': '12.3.0'}
 
 source_urls = ['https://cpan.metacpan.org/authors/id/C/CJ/CJFIELDS/']
 sources = [SOURCE_TAR_GZ]
 checksums = ['686152f8ce7c611d27ee35ac002ecc309f6270e289a482993796a23bb5388246']
 
 dependencies = [
-    ('Perl', '5.36.0'),
+    ('Perl', '5.36.1'),
     ('BioPerl', '1.7.8'),
 ]
 

Diff against Bio-SearchIO-hmmer-1.7.3-GCC-11.3.0.eb

easybuild/easyconfigs/b/Bio-SearchIO-hmmer/Bio-SearchIO-hmmer-1.7.3-GCC-11.3.0.eb

diff --git a/easybuild/easyconfigs/b/Bio-SearchIO-hmmer/Bio-SearchIO-hmmer-1.7.3-GCC-11.3.0.eb b/easybuild/easyconfigs/b/Bio-SearchIO-hmmer/Bio-SearchIO-hmmer-1.7.3-GCC-12.3.0.eb
index 840b2a8d6f..8c8af50568 100644
--- a/easybuild/easyconfigs/b/Bio-SearchIO-hmmer/Bio-SearchIO-hmmer-1.7.3-GCC-11.3.0.eb
+++ b/easybuild/easyconfigs/b/Bio-SearchIO-hmmer/Bio-SearchIO-hmmer-1.7.3-GCC-12.3.0.eb
@@ -7,14 +7,14 @@ homepage = 'https://metacpan.org/pod/Bio::SearchIO::hmmer3'
 description = """Code to parse output from hmmsearch, hmmscan, phmmer and nhmmer, compatible
 with both version 2 and version 3 of the HMMER package from http://hmmer.org."""
 
-toolchain = {'name': 'GCC', 'version': '11.3.0'}
+toolchain = {'name': 'GCC', 'version': '12.3.0'}
 
 source_urls = ['https://cpan.metacpan.org/authors/id/C/CJ/CJFIELDS/']
 sources = [SOURCE_TAR_GZ]
 checksums = ['686152f8ce7c611d27ee35ac002ecc309f6270e289a482993796a23bb5388246']
 
 dependencies = [
-    ('Perl', '5.34.1'),
+    ('Perl', '5.36.1'),
     ('BioPerl', '1.7.8'),
 ]
 

Diff against Bio-SearchIO-hmmer-1.7.3-GCC-11.2.0.eb

easybuild/easyconfigs/b/Bio-SearchIO-hmmer/Bio-SearchIO-hmmer-1.7.3-GCC-11.2.0.eb

diff --git a/easybuild/easyconfigs/b/Bio-SearchIO-hmmer/Bio-SearchIO-hmmer-1.7.3-GCC-11.2.0.eb b/easybuild/easyconfigs/b/Bio-SearchIO-hmmer/Bio-SearchIO-hmmer-1.7.3-GCC-12.3.0.eb
old mode 100755
new mode 100644
index 89b75450d9..8c8af50568
--- a/easybuild/easyconfigs/b/Bio-SearchIO-hmmer/Bio-SearchIO-hmmer-1.7.3-GCC-11.2.0.eb
+++ b/easybuild/easyconfigs/b/Bio-SearchIO-hmmer/Bio-SearchIO-hmmer-1.7.3-GCC-12.3.0.eb
@@ -7,14 +7,14 @@ homepage = 'https://metacpan.org/pod/Bio::SearchIO::hmmer3'
 description = """Code to parse output from hmmsearch, hmmscan, phmmer and nhmmer, compatible
 with both version 2 and version 3 of the HMMER package from http://hmmer.org."""
 
-toolchain = {'name': 'GCC', 'version': '11.2.0'}
+toolchain = {'name': 'GCC', 'version': '12.3.0'}
 
 source_urls = ['https://cpan.metacpan.org/authors/id/C/CJ/CJFIELDS/']
 sources = [SOURCE_TAR_GZ]
 checksums = ['686152f8ce7c611d27ee35ac002ecc309f6270e289a482993796a23bb5388246']
 
 dependencies = [
-    ('Perl', '5.34.0'),
+    ('Perl', '5.36.1'),
     ('BioPerl', '1.7.8'),
 ]
 

Updated software prokka-1.14.5-gompi-2023a.eb

Diff against prokka-1.14.5-gompi-2022b.eb

easybuild/easyconfigs/p/prokka/prokka-1.14.5-gompi-2022b.eb

diff --git a/easybuild/easyconfigs/p/prokka/prokka-1.14.5-gompi-2022b.eb b/easybuild/easyconfigs/p/prokka/prokka-1.14.5-gompi-2023a.eb
index 94b4e5939e..05fe75468f 100644
--- a/easybuild/easyconfigs/p/prokka/prokka-1.14.5-gompi-2022b.eb
+++ b/easybuild/easyconfigs/p/prokka/prokka-1.14.5-gompi-2023a.eb
@@ -13,7 +13,7 @@ version = '1.14.5'
 homepage = 'https://www.vicbioinformatics.com/software.prokka.shtml'
 description = "Prokka is a software tool for the rapid annotation of prokaryotic genomes."
 
-toolchain = {'name': 'gompi', 'version': '2022b'}
+toolchain = {'name': 'gompi', 'version': '2023a'}
 
 source_urls = ['https://github.com/tseemann/prokka/archive/']
 sources = ['v%(version)s.zip']
@@ -21,7 +21,7 @@ checksums = ['0c13dd5621c352633565f5831c4e85ce2e1e400c2f17ba50800282ae121803ff']
 
 dependencies = [
     ('BioPerl', '1.7.8'),
-    ('BLAST+', '2.14.0'),
+    ('BLAST+', '2.14.1'),
     ('Java', '11', '', SYSTEM),
     ('Bio-SearchIO-hmmer', '1.7.3'),
     ('parallel', '20230722'),

Diff against prokka-1.14.5-gompi-2022a.eb

easybuild/easyconfigs/p/prokka/prokka-1.14.5-gompi-2022a.eb

diff --git a/easybuild/easyconfigs/p/prokka/prokka-1.14.5-gompi-2022a.eb b/easybuild/easyconfigs/p/prokka/prokka-1.14.5-gompi-2023a.eb
index c1a3cfa1cd..05fe75468f 100644
--- a/easybuild/easyconfigs/p/prokka/prokka-1.14.5-gompi-2022a.eb
+++ b/easybuild/easyconfigs/p/prokka/prokka-1.14.5-gompi-2023a.eb
@@ -13,7 +13,7 @@ version = '1.14.5'
 homepage = 'https://www.vicbioinformatics.com/software.prokka.shtml'
 description = "Prokka is a software tool for the rapid annotation of prokaryotic genomes."
 
-toolchain = {'name': 'gompi', 'version': '2022a'}
+toolchain = {'name': 'gompi', 'version': '2023a'}
 
 source_urls = ['https://github.com/tseemann/prokka/archive/']
 sources = ['v%(version)s.zip']
@@ -21,11 +21,11 @@ checksums = ['0c13dd5621c352633565f5831c4e85ce2e1e400c2f17ba50800282ae121803ff']
 
 dependencies = [
     ('BioPerl', '1.7.8'),
-    ('BLAST+', '2.13.0'),
+    ('BLAST+', '2.14.1'),
     ('Java', '11', '', SYSTEM),
     ('Bio-SearchIO-hmmer', '1.7.3'),
-    ('parallel', '20220722'),
-    ('tbl2asn', '20220427', '-linux64', SYSTEM),
+    ('parallel', '20230722'),
+    ('tbl2asn', '20230713', '-linux64', SYSTEM),
 ]
 
 local_bin_files = ['prokka', 'prokka-cdd_to_hmm', 'prokka-genpept_to_fasta_db', 'prokka-tigrfams_to_hmm',

Diff against prokka-1.14.5-gompi-2021b.eb

easybuild/easyconfigs/p/prokka/prokka-1.14.5-gompi-2021b.eb

diff --git a/easybuild/easyconfigs/p/prokka/prokka-1.14.5-gompi-2021b.eb b/easybuild/easyconfigs/p/prokka/prokka-1.14.5-gompi-2023a.eb
old mode 100755
new mode 100644
index 9ce8c18ac8..05fe75468f
--- a/easybuild/easyconfigs/p/prokka/prokka-1.14.5-gompi-2021b.eb
+++ b/easybuild/easyconfigs/p/prokka/prokka-1.14.5-gompi-2023a.eb
@@ -13,7 +13,7 @@ version = '1.14.5'
 homepage = 'https://www.vicbioinformatics.com/software.prokka.shtml'
 description = "Prokka is a software tool for the rapid annotation of prokaryotic genomes."
 
-toolchain = {'name': 'gompi', 'version': '2021b'}
+toolchain = {'name': 'gompi', 'version': '2023a'}
 
 source_urls = ['https://github.com/tseemann/prokka/archive/']
 sources = ['v%(version)s.zip']
@@ -21,11 +21,11 @@ checksums = ['0c13dd5621c352633565f5831c4e85ce2e1e400c2f17ba50800282ae121803ff']
 
 dependencies = [
     ('BioPerl', '1.7.8'),
-    ('BLAST+', '2.12.0'),
+    ('BLAST+', '2.14.1'),
     ('Java', '11', '', SYSTEM),
     ('Bio-SearchIO-hmmer', '1.7.3'),
-    ('parallel', '20210722'),
-    ('tbl2asn', '20220427', '-linux64', SYSTEM),
+    ('parallel', '20230722'),
+    ('tbl2asn', '20230713', '-linux64', SYSTEM),
 ]
 
 local_bin_files = ['prokka', 'prokka-cdd_to_hmm', 'prokka-genpept_to_fasta_db', 'prokka-tigrfams_to_hmm',