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Fix issue with visualisation of all KEGG pathway diagrams - fixes #214 #217

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merged 1 commit into from
Oct 14, 2024
Merged

Fix issue with visualisation of all KEGG pathway diagrams - fixes #214 #217

merged 1 commit into from
Oct 14, 2024

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egeulgen
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As reported in #214 , the visualize_KEGG_diagram function is currently exiting unexpectedly raising the below error:

Error in ggplot_add.overlay_raw_map(object, p, objectname) : 
  No PNG file found in the directory.

This PR resolves the issue by omitting the use_cache = FALSE argument in the relevant ggkegg invocations.

@egeulgen egeulgen added the bug label Oct 14, 2024
@egeulgen egeulgen self-assigned this Oct 14, 2024
@egeulgen egeulgen linked an issue Oct 14, 2024 that may be closed by this pull request
egeulgen, this enhancement does not seem to be working. KEGG diagrams are imported but they do no overlay the input data. Do you have any suggestions on how to fix this? #214
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@egeulgen egeulgen merged commit 5b64776 into master Oct 14, 2024
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