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  1. metabolisHMM metabolisHMM Public

    Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs

    Python 18 5

  2. BLAST-DAGMan BLAST-DAGMan Public

    Directed Acyclic Workflow Manager for running BLAST all-v-all on HTCondor

    Python

  3. MEHG MEHG Public

    Exploring the phylogenetic and metabolic diversity of microbial mercury methylation

    R 3

  4. EBPR-MAGs EBPR-MAGs Public

    Extracting, refining, and utilizing MAGs from EBPR reactor metagenomic time-series

    HTML 1 2

  5. genomes-MAGs-database genomes-MAGs-database Public

    Creation of a database of Genbank genomes including isolate reference genomes and MAGs, and parallelizing 1000s of genome searches for a specific marker

    Python 8 2

  6. ppk1_Database ppk1_Database Public

    Repository for assigning Accumulibacter clade designations based on ppk1 nomenclature

    1