Fixing CI 9 - Pt.4 of: Flexibility in the use of slot or layer parame…

…ter in Seurat::GetAssayData(). This should avoid warnings in tests.
enblacar · Feb 6, 2024 · e303149 · e303149
1 parent 056130d
commit e303149
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Showing 2 changed files with 6 additions and 6 deletions.
diff --git a/R/do_DotPlot.R b/R/do_DotPlot.R
@@ -199,9 +199,9 @@ do_DotPlot <- function(sample,
                                    assay = assay,
                                    slot = slot)
     } else {
-      data <- Seurat::LayerData(object = sample,
-                                assay = assay,
-                                layer = slot)
+      data <- SeuratObject::LayerData(object = sample,
+                                      assay = assay,
+                                      layer = slot)
     }
 
     data <- data[features, , drop = FALSE] %>% 

diff --git a/R/do_GroupwiseDEPlot.R b/R/do_GroupwiseDEPlot.R
@@ -228,9 +228,9 @@ do_GroupwiseDEPlot <- function(sample,
                                  assay = assay,
                                  slot = slot)
   } else {
-    data <- Seurat::LayerData(object = sample,
-                              assay = assay,
-                              layer = slot)
+    data <- SeuratObject::LayerData(object = sample,
+                                    assay = assay,
+                                    layer = slot)
   }
 
   expr.data <- data[data.use$gene, , drop = FALSE] %>%