update tests

epiforecasts · Oct 16, 2023 · d93a53e · d93a53e
1 parent ce4b744
commit d93a53e
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Showing 3 changed files with 4 additions and 19 deletions.
diff --git a/tests/testthat/setup.R b/tests/testthat/setup.R
@@ -1,4 +1,5 @@
 library("data.table")
+library("lifecycle")
 
 if (identical(Sys.getenv("NOT_CRAN"), "true")) {
   files <- c(

diff --git a/tests/testthat/test-delays.R b/tests/testthat/test-delays.R
@@ -83,6 +83,7 @@ test_that("contradictory delays are caught", {
 })
 
 test_that("deprecated arguments are caught", {
+  options(lifecycle_verbosity = "warning")
   expect_warning(
     test_stan_delays(
       generation_time = generation_time_opts(mean = 3),
@@ -113,22 +114,5 @@ test_that("deprecated arguments are caught", {
       params = delay_params
     ), "deprecated"
   )
-  expect_warning(
-    test_stan_delays(
-      generation_time = generation_time_opts(
-        get_generation_time(
-          disease = "SARS-CoV-2", source = "ganyani",
-        )
-      ),
-    ), "deprecated"
-  )
-  expect_warning(
-    test_stan_delays(
-      delays = delay_opts(
-        get_incubation_period(
-          disease = "SARS-CoV-2", source = "lauer"
-        )
-      ),
-    ), "deprecated"
-  )
+  options(lifecycle_verbosity = NULL)
 })
diff --git a/tests/testthat/test-report_cases.R b/tests/testthat/test-report_cases.R
@@ -20,6 +20,6 @@ test_that("report_cases can simulate infections forward", {
   expect_equal(class(reported_cases), "list")
   expect_equal(class(reported_cases$samples), c("data.table", "data.frame"))
   expect_equal(class(reported_cases$summarised), c("data.table", "data.frame"))
-  expect_equal(nrow(reported_cases$summarised), 9)
+  expect_equal(nrow(reported_cases$summarised), 10)
   expect_equal(class(reported_cases$summarised$median), "numeric")
 })