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Add a new species or a new genome

Zhang (Frank) Cheng edited this page Nov 19, 2020 · 7 revisions

resources

Example/steps:

  1. if it is a new species, add into choice_for_species in the masterseq/model.py
  2. insert genome in db psql: insert into masterseq_app_genomeinfo (id,genome_name,species) values (7,'AgamP4','mosquito');
  3. In setqc_app/view.py add the new options
  4. On TSCC, install the new genome and make TSS file using the script
  5. In the pipeline's config file, adding the info of the new genome
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