Troubleshooting Cheatsheet

KeyError(Index) when adding a new run in Seqmanager App:

• Make sure there is only one blank or one tab between Sequencing_ID and i7index. Or LIMS will recognize blank as an index id and throw the KeyError.

Notes when adding a new set in SetQC app:

• The current pipeline does not support a set with only one library.
• The current pipeline does not support a set including libraries with different genome
• Try to avoid using the special character ' in set name. You are able to add it in LIMS without throwing an error, but the pipeline would not work after you click to submit the setQC job.

Add new species to LIMS:

• Instruction to install a new specie: https://github.com/epigen-UCSD/epigen_ucsd_django/wiki/Add-a-new-species-or-a-new-genome
• Apart from the above instruction written by Frank, a few things should be taken care of:

LIMS is down:

• Instruction to reboot the LIMS: https://github.com/epigen-UCSD/epigen_ucsd_django/wiki/Deploy-instruction