Skip to content

Commit

Permalink
output data to console
Browse files Browse the repository at this point in the history
  • Loading branch information
lorenasandoval88 committed Mar 26, 2024
1 parent 65faf19 commit 471dd5d
Showing 1 changed file with 25 additions and 10 deletions.
35 changes: 25 additions & 10 deletions sdk/allTraits.js
Original file line number Diff line number Diff line change
Expand Up @@ -17,6 +17,7 @@ let fetchAll = localforage.createInstance({
name: "fetchAll",
storeName: "urls"
})
let output = []

const traitFiles = (await fetchAll2('https://www.pgscatalog.org/rest/trait/all')).flatMap(x => x)
const traits = Array.from(new Set(traitFiles.flatMap(x => x["trait_categories"])
Expand Down Expand Up @@ -73,7 +74,6 @@ plotly.newPlot(topBarCategoriesDiv, dt, layout);

let topBarTraitsDiv = document.getElementById("topBarTraits")
let traitList = traitFiles.sort((a, b) => a.associated_pgs_ids.length - b.associated_pgs_ids.length)

var layout = {
autosize: true,
height: traitFiles.length * 4,
Expand Down Expand Up @@ -115,14 +115,21 @@ plotly.newPlot(topBarTraitsDiv, dt, layout);

// bar chart of variant sizes after click-----------------------------------------
topBarCategoriesDiv.on('plotly_click', async function (data) {
console.log("Category selected:",data.points[0].y)
let pgsIds = getAllPgsIdsByCategory(data.points[0].y)
let category = data.points[0].y
console.log("Category selected:",category)

let pgsIds = getAllPgsIdsByCategory(category)
let scoreFiles = (await getscoreFiles(pgsIds)).sort((a, b) => a.variants_number - b.variants_number)
let obj = {}
obj[category] = scoreFiles
output.push(obj)
console.log("output",output)

var layout = {
autosize: true,
height: 600,
width: 600,
title: `Variant sizes for ${pgsIds.length} "${data.points[0].y}" entries `,
title: `Variant sizes for ${pgsIds.length} "${category}" entries `,
margin: {
l: 390,
r: 0,
Expand Down Expand Up @@ -177,9 +184,12 @@ topBarCategoriesDiv.on('plotly_click', async function (data) {
// bar chart of variant size by trait from pie selection------------------------
document.getElementById("pgsPie").on('plotly_click', async function (data2) {
let trait = data2.points[0].label
console.log("Subcategory selected:",data2.points[0].label)

let res = scoreFiles.filter(x => x.trait_reported === data2.points[0].label).sort((a, b) => a.variants_number - b.variants_number)
console.log("Subcategory selected:",trait)
let res = scoreFiles.filter(x => x.trait_reported === trait).sort((a, b) => a.variants_number - b.variants_number)
let obj = {}
obj[trait] = res
output.push(obj)
console.log("output",output)
var data = [{
x: res.map(x => x.variants_number),
y: res.map(x => x.trait_reported.concat(" " + x.id)),
Expand All @@ -191,7 +201,7 @@ topBarCategoriesDiv.on('plotly_click', async function (data) {
}];
var layout = {
autosize: true,
title: `Variant sizes ${res.length} "${data2.points[0].label}" entries`,
title: `Variant sizes ${res.length} "${trait}" entries`,
margin: {
l: 250
},
Expand All @@ -210,12 +220,17 @@ topBarCategoriesDiv.on('plotly_click', async function (data) {

//bar chart of traits -----------------------------------------
topBarTraitsDiv.on('plotly_click', async function (data) {
console.log("Trait selected:",data.points[0].y)
let trait = data.points[0].y
console.log("Trait selected:",trait)
let pgsIds = traitFiles.filter(tfile => tfile.label == data.points[0].label)[0].associated_pgs_ids
let scoreFiles = (await getscoreFiles(pgsIds)).sort((a, b) => a.variants_number - b.variants_number)
let obj = {}
obj[trait] = scoreFiles
output.push(obj)
console.log("output",output)
var layout = {
autosize: true,
title: `Variant sizes for ${pgsIds.length} "${data.points[0].y}" entries `,
title: `Variant sizes for ${pgsIds.length} "${trait}" entries `,
margin: {
l: 390
},
Expand Down

0 comments on commit 471dd5d

Please sign in to comment.