Merge pull request #6 from esaude/develop

Develop

deletePatientData/deletePatientData.sh

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+#GITHUB_URL="https://raw.githubusercontent.com/Bahmni/bahmni-scripts/master/deletePatientData/0.91"
+
+OPENMRS_SQL_FILE="deletePatientDataForOpenMRS.sql"
+OPENELIS_SQL_FILE="deletePatientDataForOpenElis.sql"
+OPENERP_SQL_FILE="deletePatientDataForOpenERP.sql"
+CURDIR=$(pwd)
+
+
+RED='\033[0;31m'
+GREEN='\033[0;32m'
+CYAN='\033[0;36m'
+NOCOLOR='\033[0m'
+
+stop_all_bahmni_services()
+{
+
+	echo -e "${CYAN}Stopping all bahmni related services${NOCOLOR}"
+	bahmni -i $INVENTORY_FILE stop
+
+}
+
+download_and_delete_openmrs_patient_data(){
+    echo -e "${CYAN}downloading openmrs delete patient data sql file${NOCOLOR}"
+	if [ -z $OPENMRS_DB_USER ];then
+	    echo -e "${RED}OPENMRS_DB_USER is unset.Please set the ENVIRONMENT VARIABLE OPENMRS_DB_USER ${NOCOLOR}"
+	else
+	    echo -e "${CYAN} deleting openmrs patient data${NOCOLOR}"
+	    mysql -u$OPENMRS_DB_USER -p$PASSWORD openmrs < $OPENMRS_SQL_FILE
+	    exitcode=$?
+	    if [ $exitcode -ne 0 ]; then
+	        echo -e "${RED}Failed to delete the openmrs patient data${NOCOLOR}"
+	     else
+	        echo -e "${GREEN} Successfully deleted the openmrs patient data${NOCOLOR}"
+	     fi
+	fi
+}
+
+download_and_delete_openelis_patient_data(){
+    echo -e "${CYAN}downloading openelis delete patient data sql file${NOCOLOR}"
+	if [ -z "$OPENELIS_DB_USER" ];
+	    then echo -e "${RED}OPENELIS_DB_USER is unset. Please set the ENVIRONMENT VARIABLE OPENELIS_DB_USER${NOCOLOR}"
+	else
+	    echo -e "${CYAN}deleting openelis patient data ${NOCOLOR}"
+	    psql -U$OPENELIS_DB_USER clinlims < $OPENELIS_SQL_FILE
+	    exitcode=$?
+	    if [ $exitcode -ne 0 ]; then
+	        echo -e "${RED}Failed to delete the openelis patient data${NOCOLOR}"
+	     else
+	        echo -e "${GREEN} Successfully deleted the openelis patient data${NOCOLOR}"
+	     fi
+	fi
+}
+
+download_and_delete_openerp_patient_data(){
+    echo -e "${CYAN}downloading openerp delete patient data sql file${NOCOLOR}"
+	if [ -z "$OPENERP_DB_USER" ];
+	    then echo -e "${RED}OPENERP_DB_USER is unset. Please set the ENVIRONMENT VARIABLE OPENERP_DB_USER${NOCOLOR}"
+	else
+	    echo -e "${CYAN}deleting openerp patient data${NOCOLOR}"
+	    psql -U$OPENERP_DB_USER openerp < $OPENERP_SQL_FILE
+	    exitcode=$?
+	    if [ $exitcode -ne 0 ]; then
+	        echo -e "${RED}Failed to delete the openerp patient data${NOCOLOR}"
+	     else
+	        echo -e "${GREEN} Successfully deleted the openerp patient data${NOCOLOR}"
+	     fi
+	fi
+}
+
+start_all_bahmni_services()
+{
+	echo -e "${CYAN}Starting all bahmni related services${NOCOLOR}"
+    bahmni -i $INVENTORY_FILE start
+}
+
+stop_all_bahmni_services
+download_and_delete_openmrs_patient_data
+download_and_delete_openelis_patient_data
+download_and_delete_openerp_patient_data
+start_all_bahmni_services

deletePatientData/deletePatientDataForOpenERP.sql

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+truncate table
+	 sale_order,
+	 sale_order_line,
+	 sale_make_invoice,
+	 sale_order_invoice_rel,
+	 sale_order_line_invoice_rel,
+	 sale_order_line_make_invoice,
+	 sale_order_line_property_rel,
+	 sale_order_tax,
+
+	 sale_order_group,
+	 account_invoice_line,
+	 ledger_journal_rel,
+	 reconcile_account_rel,
+	 validate_account_move,
+	 procurement_order,
+	 purchase_order,
+	 purchase_order_line,
+	 purchase_invoice_rel,
+	 stock_picking,
+	 stock_partial_picking,
+	 stock_partial_picking_line,
+	 stock_partial_move,
+	 stock_partial_move_line,
+	 stock_move,
+	 stock_move_split,
+	 stock_move_split_lines,
+	 stock_return_picking_memory,
+	 stock_inventory_move_rel,
+	 stock_move_history_ids,
+
+	 account_invoice_line_tax,
+	 account_invoice,
+	 account_invoice_refund,
+	 account_invoice_tax,
+	 account_invoice_cancel,
+	 account_invoice_confirm,
+
+	 purchase_order_line_invoice_rel,
+	 stock_warehouse_orderpoint,
+	 purchase_order_taxe,
+
+	 account_voucher,
+	 account_bank_statement_line,
+	 account_voucher_line,
+	 account_bank_statement_line_move_rel,
+
+	 account_move_line,
+	 account_move_line_relation,
+	 account_analytic_line,
+	 hr_analytic_timesheet;
+
+truncate table
+	 res_partner_attributes,
+	 res_partner_address,
+	 res_partner_bank_type_field,
+	 res_partner_res_partner_category_rel,
+	 res_partner_category;
+
+delete from res_partner where not exists (select ru.partner_id from res_users ru where ru.partner_id = res_partner.id) and id != 1;
+delete from markers where feed_uri like '%atomfeed/encounter/recent%' OR feed_uri like '%atomfeed/patient/recent%';
+delete from event_records where category = 'product';
+
+truncate table event_records_offset_marker;

deletePatientData/deletePatientDataForOpenElis.sql

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+truncate table result_signature,
+	referral_result,
+	referral,
+	result_inventory,
+	result,
+	worksheet_analyte,
+	note,
+	report_external_export,
+	report_external_import,
+	analysis_qaevent,
+	analysis_storages,
+	analysis_users,
+	analysis,
+	sample_qaevent,
+	sample_requester,
+	sample_human,
+	sample_newborn,
+	sample_animal,
+	sample_environmental,
+	sample_item,
+	sample_organization,
+	sample_projects,
+	sample,
+	observation_history,
+	patient,
+	patient_identity,
+	patient_occupation,
+	person_address,
+	patient_patient_type,
+	patient_relations,
+	organization_contact;
+
+delete from person where not exists (select p.person_id from provider p where p.person_id = person.id);
+delete from markers where feed_uri like '%atomfeed/encounter/recent%' OR feed_uri like '%atomfeed/patient/recent%';
+delete from event_records where category = 'patient';
+
+truncate table event_records_offset_marker;

deletePatientData/deletePatientDataForOpenMRS.sql

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+set foreign_key_checks=0;
+
+truncate table test_order;
+truncate table drug_order;
+truncate table note;   
+truncate table obs_relationship;  
+truncate table concept_proposal;  	
+truncate table concept_proposal_tag_map;
+truncate table obs;
+truncate table orders;
+truncate table drug_order; 
+truncate table test_order; 
+truncate table relationship;
+truncate table visit_attribute;
+truncate table bed_patient_assignment_map;
+truncate table encounter_provider;
+truncate table episode_encounter;
+truncate table order_group;
+truncate table encounter;  
+truncate table appointmentscheduling_appointment;
+truncate table appointmentscheduling_appointment_status_history;
+truncate table patient_appointment;
+truncate table visit_attribute;
+truncate table visit; 
+truncate table patient_identifier;
+truncate table appointmentscheduling_appointment_request;
+truncate table conditions;
+truncate table cohort_member;
+truncate table patient_program;
+truncate table episode_patient_program;
+truncate table patient_program_attribute;
+truncate table patient_state;
+truncate table patient; 
+truncate table episode;
+truncate table audit_log;
+delete from person_address where person_id <> 1;
+delete from person_attribute where person_id <> 1;
+delete from person_name where not exists
+	(select u.person_id from users u where person_name.person_id = u.person_id or person_name.person_id = 1)
+	and not exists (select p.person_id from provider p where person_name.person_id = p.person_id or person_name.person_id = 1);
+delete from person where not exists
+	(select u.person_id from users u where person.person_id = u.person_id or person.person_id = 1)
+	and not exists (select p.person_id from provider p where person.person_id = p.person_id or person.person_id = 1);
+
+delete from event_records where category = 'patient' OR category = 'Encounter';
+delete from markers where feed_uri like '%feed/patient/recent%' ;	
+
+truncate table event_records_offset_marker;
+
+update bed set status="AVAILABLE";
+
+set foreign_key_checks=1;

deletePatientData/sesp_delete_patient_data.sh

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+# Set environment variables required for the scripts
+export OPENMRS_DB_USER=openmrs-user
+export OPENELIS_DB_USER=clinlims
+export OPENERP_DB_USER=openerp
+export INVENTORY_FILE=local
+
+# Add executable permission for the scripts
+chmod a+x *
+
+# Start the script execution
+sh deletePatientData.sh

script/MOZ_clonRepos.sh

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+#!/bin/bash
+
+# Create Directory 
+cd /opt
+sudo mkdir sesp_poc_repositories
+
+# Clone Repos
+
+cd /opt/sesp_poc_repositories
+
+# Bahmni-config
+sudo git clone https://github.com/esaude/esaude-poc-config.git --branch develop
+
+# Openmrs-module-bahmniapps
+sudo git clone https://github.com/esaude/openmrs-module-bahmniapps.git --branch develop
+
+# Metadata
+sudo git clone https://github.com/esaude/sesp-bahmni-metadata.git --branch develop
+
+# Openerp-module
+sudo git clone https://github.com/esaude/openerp-modules.git --branch develop
+
+# Patient-status-scheduler
+sudo git clone https://github.com/esaude/patient-status-scheduler.git --branch develop
+
+# Bahmni-emr-hospital-service
+sudo git clone https://github.com/esaude/bahmni-emr-hospital-service.git --branch develop
+
+# Sesp-infrastructure
+sudo git clone https://github.com/esaude/sesp-infrastructure.git --branch develop
+
+
+
+
+

script/MOZ_dev_server_setup.sh

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+#!/bin/bash
+
+# Link the app folder
+sudo mv /opt/bahmni-web/etc/bahmniapps /opt/bahmni-web/etc/bahmniapps-original
+sudo ln -s /opt/sesp_poc_repositories/openmrs-module-bahmniapps/ui/app  /opt/bahmni-web/etc/bahmniapps
+sudo chown -h bahmni:bahmni /opt/bahmni-web/etc/bahmniapps
+
+# Link the config folder
+sudo mv -b /opt/bahmni-web/etc/bahmni_config /opt/bahmni-web/etc/bahmni_config-original
+sudo ln -s /opt/sesp_poc_repositories/esaude-poc-config /opt/bahmni-web/etc/bahmni_config
+sudo chown -h bahmni:bahmni /opt/bahmni-web/etc/bahmni_config
+
+# Link the metadata folder
+sudo ln -s  /opt/sesp_poc_repositories/sesp-bahmni-metadata/configuration /opt/openmrs/configuration
+sudo chown -h bahmni:bahmni /opt/openmrs/configuration
+
+# Link the module folder
+sudo mv /opt/openmrs/modules /opt/openmrs/modules-original
+sudo ln -s /opt/sesp_poc_repositories/sesp-infrastructure/Openmrs_Modules /opt/openmrs/modules
+sudo chown -h bahmni:bahmni /opt/openmrs/modules
+
+# Link the HTML folder
+sudo mv -b /var/www/html /var/www/html-original
+sudo ln -s /opt/sesp_poc_repositories/bahmni-emr-hospital-service/html /var/www/html
+sudo chown -h bahmni:bahmni /var/www/html
+
+# Link the Openerp-Modules
+sudo mv -b /opt/bahmni-erp/bahmni-addons /opt/bahmni-erp/bahmni-addons-original
+sudo ln -s  /opt/sesp_poc_repositories/modules /opt/bahmni-erp/bahmni-addons
+sudo chown -h bahmni:bahmni /opt/bahmni-erp/bahmni-addons
+
+
+# Run sql scripts
+mysql -uroot -ppassword openmrs < /opt/sesp_poc_repositories/sesp-bahmni-metadata/sql/mySQL/alter_visit_locatiion.sql
+mysql -uroot -ppassword openmrs < /opt/sesp_poc_repositories/sesp-bahmni-metadata/sql/mySQL/person_attribute_alter_value_column.sql
+
+# Run postgresql scripts
+#OpenElis
+psql -Uclinlims clinlims  < /opt/sesp_poc_repositories/sesp-bahmni-metadata/sql/elisPostgresql/1_openElisUesrRole.sql
+psql -Uclinlims clinlims  < /opt/sesp_poc_repositories/sesp-bahmni-metadata/sql/elisPostgresql/2_removeHomeIcon.sql
+psql -Uclinlims clinlims  < /opt/sesp_poc_repositories/sesp-bahmni-metadata/sql/elisPostgresql/3_UpdateTestName.sql
+psql -Uclinlims clinlims  < /opt/sesp_poc_repositories/sesp-bahmni-metadata/sql/elisPostgresql/4_hideDepartment.sql
+psql -Uclinlims clinlims  < /opt/sesp_poc_repositories/sesp-bahmni-metadata/sql/elisPostgresql/5_hideSampleType.sql
+psql -Uclinlims clinlims  < /opt/sesp_poc_repositories/sesp-bahmni-metadata/sql/elisPostgresql/6_unitRanges.sql
+psql -Uclinlims clinlims  < /opt/sesp_poc_repositories/sesp-bahmni-metadata/sql/elisPostgresql/7_visitType.sql
+# OpenERP
+psql -Uopenerp openerp  < /opt/sesp_poc_repositories/sesp-bahmni-metadata/sql/erpPostgresql/categoryNameUpdate.sql
+psql -Uopenerp openerp  < /opt/sesp_poc_repositories/sesp-bahmni-metadata/sql/erpPostgresql/currencyUpdate.sql
+psql -Uopenerp openerp  < /opt/sesp_poc_repositories/sesp-bahmni-metadata/sql/erpPostgresql/syncable_units.sql
+
+
+# Restart OpenMRS
+sudo service openmrs restart

startopenerp/README.md

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+# Automatically run script at boot time
+# Following are simple instructions
+# Make /etc/rc.d/rc.local executable, by using this command:
+  chmod +x /etc/rc.d/rc.local
+# Edit the file /etc/rc.local and to the bottom of it simply add the line pointing to your shell script:
+  /path/MyShScript.sh
+# And then to make it executable, run:
+  chmod +x /path/MyShScript.sh
+# DONE!
+
+

startopenerp/startopenerp.sh

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+#!/bin/bash
+
+# Stop OpenERP service
+sudo service openerp stop
+# Start OpenERP service
+sudo su - openerp -c "cd /opt/bahmni-erp/ && nohup ./openerp-server --addons-path=/opt/bahmni-erp/bahmni-addons,/usr/lib/python2.6/site-packages/openerp-7.0_20130301_002301-py2.6.egg/openerp/addons &"
+echo "OpenERP started"
+
+