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Merge pull request NCAR#99 from dustinswales/feature_reorg_physics
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Reorganization of physics repository
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@dustinswales
dustinswales authored Jan 3, 2024
2 parents df9e1ad + 26ca617 commit 53062d6
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Showing 373 changed files with 258 additions and 475 deletions.
5 changes: 4 additions & 1 deletion .gitmodules
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[submodule "physics/rte-rrtmgp"]
path = physics/rte-rrtmgp
path = physics/Radiation/RRTMGP/rte-rrtmgp
url = https://github.com/earth-system-radiation/rte-rrtmgp
branch = main
[submodule "physics/Radiation/RRTMGP/rte-rrtmgp"]
path = physics/Radiation/RRTMGP/rte-rrtmgp
url = https://github.com/earth-system-radiation/rte-rrtmgp
54 changes: 27 additions & 27 deletions CMakeLists.txt
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Expand Up @@ -79,37 +79,37 @@ get_filename_component(LOCAL_CURRENT_SOURCE_DIR ${FULL_PATH_TO_CMAKELISTS} DIREC
#------------------------------------------------------------------------------

# List of files that need to be compiled without OpenMP
set(SCHEMES_OPENMP_OFF ${LOCAL_CURRENT_SOURCE_DIR}/physics/rte-rrtmgp/rrtmgp/mo_gas_optics.F90
${LOCAL_CURRENT_SOURCE_DIR}/physics/rte-rrtmgp/rrtmgp/mo_rrtmgp_constants.F90
${LOCAL_CURRENT_SOURCE_DIR}/physics/rte-rrtmgp/rrtmgp/mo_gas_concentrations.F90
${LOCAL_CURRENT_SOURCE_DIR}/physics/rte-rrtmgp/rrtmgp/mo_rrtmgp_util_string.F90
${LOCAL_CURRENT_SOURCE_DIR}/physics/rte-rrtmgp/rrtmgp/kernels/mo_gas_optics_kernels.F90
${LOCAL_CURRENT_SOURCE_DIR}/physics/rte-rrtmgp/rrtmgp/mo_gas_optics_rrtmgp.F90
${LOCAL_CURRENT_SOURCE_DIR}/physics/rte-rrtmgp/extensions/mo_rrtmgp_clr_all_sky.F90
${LOCAL_CURRENT_SOURCE_DIR}/physics/rte-rrtmgp/extensions/mo_fluxes_byband.F90
${LOCAL_CURRENT_SOURCE_DIR}/physics/rte-rrtmgp/extensions/solar_variability/mo_solar_variability.F90
${LOCAL_CURRENT_SOURCE_DIR}/physics/rte-rrtmgp/extensions/mo_heating_rates.F90
${LOCAL_CURRENT_SOURCE_DIR}/physics/rte-rrtmgp/extensions/mo_fluxes_bygpoint.F90
${LOCAL_CURRENT_SOURCE_DIR}/physics/rte-rrtmgp/extensions/mo_compute_bc.F90
${LOCAL_CURRENT_SOURCE_DIR}/physics/rte-rrtmgp/extensions/cloud_optics/mo_cloud_sampling.F90
${LOCAL_CURRENT_SOURCE_DIR}/physics/rte-rrtmgp/extensions/cloud_optics/mo_cloud_optics.F90
${LOCAL_CURRENT_SOURCE_DIR}/physics/rte-rrtmgp/rte/mo_rte_config.F90
${LOCAL_CURRENT_SOURCE_DIR}/physics/rte-rrtmgp/rte/mo_source_functions.F90
${LOCAL_CURRENT_SOURCE_DIR}/physics/rte-rrtmgp/rte/mo_rte_sw.F90
${LOCAL_CURRENT_SOURCE_DIR}/physics/rte-rrtmgp/rte/mo_fluxes.F90
${LOCAL_CURRENT_SOURCE_DIR}/physics/rte-rrtmgp/rte/mo_rte_lw.F90
${LOCAL_CURRENT_SOURCE_DIR}/physics/rte-rrtmgp/rte/mo_rte_util_array.F90
${LOCAL_CURRENT_SOURCE_DIR}/physics/rte-rrtmgp/rte/kernels/mo_rte_solver_kernels.F90
${LOCAL_CURRENT_SOURCE_DIR}/physics/rte-rrtmgp/rte/kernels/mo_optical_props_kernels.F90
${LOCAL_CURRENT_SOURCE_DIR}/physics/rte-rrtmgp/rte/kernels/mo_fluxes_broadband_kernels.F90
${LOCAL_CURRENT_SOURCE_DIR}/physics/rte-rrtmgp/rte/mo_rte_kind.F90
${LOCAL_CURRENT_SOURCE_DIR}/physics/rte-rrtmgp/rte/mo_optical_props.F90)
set(SCHEMES_OPENMP_OFF ${LOCAL_CURRENT_SOURCE_DIR}/physics/Radiation/RRTMGP/rte-rrtmgp/rrtmgp/mo_gas_optics.F90
${LOCAL_CURRENT_SOURCE_DIR}/physics/Radiation/RRTMGP/rte-rrtmgp/rrtmgp/mo_rrtmgp_constants.F90
${LOCAL_CURRENT_SOURCE_DIR}/physics/Radiation/RRTMGP/rte-rrtmgp/rrtmgp/mo_gas_concentrations.F90
${LOCAL_CURRENT_SOURCE_DIR}/physics/Radiation/RRTMGP/rte-rrtmgp/rrtmgp/mo_rrtmgp_util_string.F90
${LOCAL_CURRENT_SOURCE_DIR}/physics/Radiation/RRTMGP/rte-rrtmgp/rrtmgp/kernels/mo_gas_optics_kernels.F90
${LOCAL_CURRENT_SOURCE_DIR}/physics/Radiation/RRTMGP/rte-rrtmgp/rrtmgp/mo_gas_optics_rrtmgp.F90
${LOCAL_CURRENT_SOURCE_DIR}/physics/Radiation/RRTMGP/rte-rrtmgp/extensions/mo_rrtmgp_clr_all_sky.F90
${LOCAL_CURRENT_SOURCE_DIR}/physics/Radiation/RRTMGP/rte-rrtmgp/extensions/mo_fluxes_byband.F90
${LOCAL_CURRENT_SOURCE_DIR}/physics/Radiation/RRTMGP/rte-rrtmgp/extensions/solar_variability/mo_solar_variability.F90
${LOCAL_CURRENT_SOURCE_DIR}/physics/Radiation/RRTMGP/rte-rrtmgp/extensions/mo_heating_rates.F90
${LOCAL_CURRENT_SOURCE_DIR}/physics/Radiation/RRTMGP/rte-rrtmgp/extensions/mo_fluxes_bygpoint.F90
${LOCAL_CURRENT_SOURCE_DIR}/physics/Radiation/RRTMGP/rte-rrtmgp/extensions/mo_compute_bc.F90
${LOCAL_CURRENT_SOURCE_DIR}/physics/Radiation/RRTMGP/rte-rrtmgp/extensions/cloud_optics/mo_cloud_sampling.F90
${LOCAL_CURRENT_SOURCE_DIR}/physics/Radiation/RRTMGP/rte-rrtmgp/extensions/cloud_optics/mo_cloud_optics.F90
${LOCAL_CURRENT_SOURCE_DIR}/physics/Radiation/RRTMGP/rte-rrtmgp/rte/mo_rte_config.F90
${LOCAL_CURRENT_SOURCE_DIR}/physics/Radiation/RRTMGP/rte-rrtmgp/rte/mo_source_functions.F90
${LOCAL_CURRENT_SOURCE_DIR}/physics/Radiation/RRTMGP/rte-rrtmgp/rte/mo_rte_sw.F90
${LOCAL_CURRENT_SOURCE_DIR}/physics/Radiation/RRTMGP/rte-rrtmgp/rte/mo_fluxes.F90
${LOCAL_CURRENT_SOURCE_DIR}/physics/Radiation/RRTMGP/rte-rrtmgp/rte/mo_rte_lw.F90
${LOCAL_CURRENT_SOURCE_DIR}/physics/Radiation/RRTMGP/rte-rrtmgp/rte/mo_rte_util_array.F90
${LOCAL_CURRENT_SOURCE_DIR}/physics/Radiation/RRTMGP/rte-rrtmgp/rte/kernels/mo_rte_solver_kernels.F90
${LOCAL_CURRENT_SOURCE_DIR}/physics/Radiation/RRTMGP/rte-rrtmgp/rte/kernels/mo_optical_props_kernels.F90
${LOCAL_CURRENT_SOURCE_DIR}/physics/Radiation/RRTMGP/rte-rrtmgp/rte/kernels/mo_fluxes_broadband_kernels.F90
${LOCAL_CURRENT_SOURCE_DIR}/physics/Radiation/RRTMGP/rte-rrtmgp/rte/mo_rte_kind.F90
${LOCAL_CURRENT_SOURCE_DIR}/physics/Radiation/RRTMGP/rte-rrtmgp/rte/mo_optical_props.F90)

# List of files that need to be compiled with different precision
set(SCHEMES_DYNAMICS)

if(${LOCAL_CURRENT_SOURCE_DIR}/physics/fv_sat_adj.F90 IN_LIST SCHEMES)
list(APPEND SCHEMES_DYNAMICS ${LOCAL_CURRENT_SOURCE_DIR}/physics/fv_sat_adj.F90)
if(${LOCAL_CURRENT_SOURCE_DIR}/physics/MP/GFDL/fv_sat_adj.F90 IN_LIST SCHEMES)
list(APPEND SCHEMES_DYNAMICS ${LOCAL_CURRENT_SOURCE_DIR}/physics/MP/GFDL/fv_sat_adj.F90)
endif()

# Remove files that need to be compiled with different precision
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0 physics/cu_c3_deep.F90 → physics/CONV/C3/cu_c3_deep.F90
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0 physics/cu_c3_driver.F90 → physics/CONV/C3/cu_c3_driver.F90
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3 changes: 2 additions & 1 deletion physics/cu_c3_driver.meta → physics/CONV/C3/cu_c3_driver.meta
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[ccpp-table-properties]
name = cu_c3_driver
type = scheme
dependencies = cu_c3_deep.F90,cu_c3_sh.F90,machine.F,physcons.F90,progsigma_calc.f90
dependencies = ../../hooks/machine.F
dependencies = cu_c3_deep.F90,cu_c3_sh.F90,../progsigma_calc.f90

########################################################################
[ccpp-arg-table]
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[ccpp-table-properties]
name = cu_c3_driver_post
type = scheme
dependencies = machine.F
dependencies = ../../hooks/machine.F

########################################################################
[ccpp-arg-table]
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0 physics/cu_c3_driver_pre.F90 → physics/CONV/C3/cu_c3_driver_pre.F90
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[ccpp-table-properties]
name = cu_c3_driver_pre
type = scheme
dependencies = machine.F
dependencies = ../../hooks/machine.F

########################################################################
[ccpp-arg-table]
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0 physics/cu_c3_sh.F90 → physics/CONV/C3/cu_c3_sh.F90
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0 physics/cs_conv.F90 → physics/CONV/Chikira_Sugiyama/cs_conv.F90
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Expand Up @@ -2,7 +2,7 @@
[ccpp-table-properties]
name = cs_conv
type = scheme
dependencies = funcphys.f90,machine.F,physcons.F90
dependencies = ../../tools/funcphys.f90,../../hooks/machine.F,../../hooks/physcons.F90

########################################################################
[ccpp-arg-table]
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0 physics/cs_conv_aw_adj.F90 → .../CONV/Chikira_Sugiyama/cs_conv_aw_adj.F90
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[ccpp-table-properties]
name = cs_conv_aw_adj
type = scheme
dependencies = machine.F
dependencies = ../../hooks/machine.F

########################################################################
[ccpp-arg-table]
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0 physics/cs_conv_post.F90 → ...cs/CONV/Chikira_Sugiyama/cs_conv_post.F90
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[ccpp-table-properties]
name = cs_conv_post
type = scheme
dependencies = machine.F
dependencies = ../../hooks/machine.F

########################################################################
[ccpp-arg-table]
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0 physics/cs_conv_pre.F90 → ...ics/CONV/Chikira_Sugiyama/cs_conv_pre.F90
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[ccpp-table-properties]
name = cs_conv_pre
type = scheme
dependencies = machine.F
dependencies = ../../hooks/machine.F

########################################################################
[ccpp-arg-table]
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0 physics/cu_gf_deep.F90 → physics/CONV/Grell_Freitas/cu_gf_deep.F90
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0 physics/cu_gf_driver.F90 → physics/CONV/Grell_Freitas/cu_gf_driver.F90
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[ccpp-table-properties]
name = cu_gf_driver
type = scheme
dependencies = cu_gf_deep.F90,cu_gf_sh.F90,machine.F,physcons.F90
dependencies = ../../hooks/machine.F
dependencies = cu_gf_deep.F90,cu_gf_sh.F90

########################################################################
[ccpp-arg-table]
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0 physics/cu_gf_driver_post.F90 → .../CONV/Grell_Freitas/cu_gf_driver_post.F90
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[ccpp-table-properties]
name = cu_gf_driver_post
type = scheme
dependencies = machine.F
dependencies = ../../hooks/machine.F

########################################################################
[ccpp-arg-table]
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0 physics/cu_gf_driver_pre.F90 → ...s/CONV/Grell_Freitas/cu_gf_driver_pre.F90
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[ccpp-table-properties]
name = cu_gf_driver_pre
type = scheme
dependencies = machine.F
dependencies = ../../hooks/machine.F

########################################################################
[ccpp-arg-table]
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0 physics/cu_gf_sh.F90 → physics/CONV/Grell_Freitas/cu_gf_sh.F90
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0 physics/rascnv.F90 → physics/CONV/RAS/rascnv.F90
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[ccpp-table-properties]
name = rascnv
type = scheme
dependencies = funcphys.f90,machine.F
dependencies = ../../tools/funcphys.f90,../../hooks/machine.F

########################################################################
[ccpp-arg-table]
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0 physics/samfaerosols.F → physics/CONV/SAMF/samfaerosols.F
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0 physics/samfdeepcnv.f → physics/CONV/SAMF/samfdeepcnv.f
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[ccpp-table-properties]
name = samfdeepcnv
type = scheme
dependencies = funcphys.f90,machine.F,samfaerosols.F,progsigma_calc.f90
dependencies = ../../tools/funcphys.f90,../../hooks/machine.F,samfaerosols.F,../progsigma_calc.f90

########################################################################
[ccpp-arg-table]
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0 physics/samfshalcnv.f → physics/CONV/SAMF/samfshalcnv.f
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[ccpp-table-properties]
name = samfshalcnv
type = scheme
dependencies = funcphys.f90,machine.F,samfaerosols.F,progsigma_calc.f90
dependencies = ../../tools/funcphys.f90,../../hooks/machine.F,samfaerosols.F,../progsigma_calc.f90

########################################################################
[ccpp-arg-table]
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0 physics/sascnvn.F → physics/CONV/SAS/sascnvn.F
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[ccpp-table-properties]
name = sascnvn
type = scheme
dependencies = funcphys.f90,machine.F
dependencies = ../../tools/funcphys.f90,../../hooks/machine.F

########################################################################
[ccpp-arg-table]
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0 physics/shalcnv.F → physics/CONV/SAS/shalcnv.F
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[ccpp-table-properties]
name = shalcnv
type = scheme
dependencies = funcphys.f90,machine.F
dependencies = ../../tools/funcphys.f90,../../hooks/machine.F

########################################################################
[ccpp-arg-table]
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0 physics/cu_ntiedtke.F90 → physics/CONV/nTiedtke/cu_ntiedtke.F90
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[ccpp-table-properties]
name = cu_ntiedtke
type = scheme
dependencies = machine.F,physcons.F90
dependencies = ../../hooks/machine.F,../../hooks/physcons.F90

########################################################################
[ccpp-arg-table]
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0 physics/cu_ntiedtke_post.F90 → physics/CONV/nTiedtke/cu_ntiedtke_post.F90
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[ccpp-table-properties]
name = cu_ntiedtke_post
type = scheme
dependencies = machine.F
dependencies = ../../hooks/machine.F

########################################################################
[ccpp-arg-table]
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0 physics/cu_ntiedtke_pre.F90 → physics/CONV/nTiedtke/cu_ntiedtke_pre.F90
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[ccpp-table-properties]
name = cu_ntiedtke_pre
type = scheme
dependencies = machine.F
dependencies = ../../hooks/machine.F

########################################################################
[ccpp-arg-table]
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0 physics/progsigma_calc.f90 → physics/CONV/progsigma_calc.f90
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0 physics/cires_orowam2017.f → physics/GWD/cires_orowam2017.f
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0 physics/cires_tauamf_data.F90 → physics/GWD/cires_tauamf_data.F90
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0 physics/cires_ugwp.F90 → physics/GWD/cires_ugwp.F90
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Expand Up @@ -3,7 +3,7 @@
type = scheme
# DH* 20200804 - this is a result of the nasty hack to call gwdps from within ugwp-v0!
dependencies=cires_ugwp_triggers.F90,cires_ugwp_initialize.F90
dependencies=cires_orowam2017.f,cires_ugwp_module.F90,gwdps.f,machine.F,ugwp_driver_v0.F
dependencies=cires_orowam2017.f,cires_ugwp_module.F90,gwdps.f,../hooks/machine.F,ugwp_driver_v0.F

########################################################################
[ccpp-arg-table]
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0 physics/cires_ugwp_initialize.F90 → physics/GWD/cires_ugwp_initialize.F90
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0 physics/cires_ugwp_module.F90 → physics/GWD/cires_ugwp_module.F90
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0 physics/cires_ugwp_post.F90 → physics/GWD/cires_ugwp_post.F90
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@@ -1,7 +1,7 @@
[ccpp-table-properties]
name = cires_ugwp_post
type = scheme
dependencies = machine.F
dependencies = ../hooks/machine.F

########################################################################
[ccpp-arg-table]
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0 physics/cires_ugwp_triggers.F90 → physics/GWD/cires_ugwp_triggers.F90
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0 physics/cires_ugwpv1_initialize.F90 → physics/GWD/cires_ugwpv1_initialize.F90
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0 physics/cires_ugwpv1_module.F90 → physics/GWD/cires_ugwpv1_module.F90
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0 physics/cires_ugwpv1_oro.F90 → physics/GWD/cires_ugwpv1_oro.F90
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0 physics/cires_ugwpv1_solv2.F90 → physics/GWD/cires_ugwpv1_solv2.F90
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0 physics/cires_ugwpv1_sporo.F90 → physics/GWD/cires_ugwpv1_sporo.F90
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0 physics/cires_ugwpv1_triggers.F90 → physics/GWD/cires_ugwpv1_triggers.F90
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0 physics/drag_suite.F90 → physics/GWD/drag_suite.F90
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[ccpp-table-properties]
name = drag_suite
type = scheme
dependencies =
dependencies = ../hooks/machine.F

########################################################################
[ccpp-arg-table]
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0 physics/gwdc.f → physics/GWD/gwdc.f
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[ccpp-table-properties]
name = gwdc
type = scheme
dependencies = machine.F
dependencies = ../hooks/machine.F

########################################################################
[ccpp-arg-table]
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0 physics/gwdc_post.f → physics/GWD/gwdc_post.f
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[ccpp-table-properties]
name = gwdc_post
type = scheme
dependencies = machine.F
dependencies = ../hooks/machine.F

########################################################################
[ccpp-arg-table]
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0 physics/gwdc_pre.f → physics/GWD/gwdc_pre.f
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[ccpp-table-properties]
name = gwdc_pre
type = scheme
dependencies = machine.F
dependencies = ../hooks/machine.F

########################################################################
[ccpp-arg-table]
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0 physics/gwdps.f → physics/GWD/gwdps.f
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[ccpp-table-properties]
name = gwdps
type = scheme
dependencies =
dependencies = ../hooks/machine.F

########################################################################
[ccpp-arg-table]
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0 physics/rayleigh_damp.f → physics/GWD/rayleigh_damp.f
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[ccpp-table-properties]
name = rayleigh_damp
type = scheme
dependencies =
dependencies = ../hooks/machine.F

########################################################################
[ccpp-arg-table]
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[ccpp-table-properties]
name = ugwpv1_gsldrag
type = scheme
dependencies = machine.F,drag_suite.F90
dependencies = ../hooks/machine.F,drag_suite.F90
dependencies = cires_ugwpv1_module.F90,cires_ugwpv1_triggers.F90,cires_ugwpv1_initialize.F90,cires_ugwpv1_solv2.F90
dependencies = cires_ugwpv1_sporo.F90,cires_ugwpv1_oro.F90
########################################################################
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[ccpp-table-properties]
name = ugwpv1_gsldrag_post
type = scheme
dependencies = machine.F
dependencies = ../hooks/machine.F

########################################################################
[ccpp-arg-table]
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[ccpp-table-properties]
name = unified_ugwp
type = scheme

dependencies=cires_ugwp_triggers.F90,cires_ugwp_initialize.F90
dependencies=cires_orowam2017.f, cires_ugwp_module.F90,gwdps.f,machine.F,ugwp_driver_v0.F
dependencies=drag_suite.F90
dependencies = ../hooks/machine.F
dependencies = cires_ugwp_triggers.F90,cires_ugwp_initialize.F90
dependencies = cires_orowam2017.f,cires_ugwp_module.F90,gwdps.f,ugwp_driver_v0.F
dependencies = drag_suite.F90

########################################################################
[ccpp-arg-table]
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0 physics/unified_ugwp_post.F90 → physics/GWD/unified_ugwp_post.F90
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[ccpp-table-properties]
name = unified_ugwp_post
type = scheme
dependencies = machine.F
dependencies = ../hooks/machine.F

########################################################################
[ccpp-arg-table]
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0 physics/GFS_DCNV_generic_post.F90 → ...UFS_SCM_NEPTUNE/GFS_DCNV_generic_post.F90
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[ccpp-table-properties]
name = GFS_DCNV_generic_post
type = scheme
dependencies = machine.F
dependencies = ../../hooks/machine.F

########################################################################
[ccpp-arg-table]
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0 physics/GFS_DCNV_generic_pre.F90 → .../UFS_SCM_NEPTUNE/GFS_DCNV_generic_pre.F90
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[ccpp-table-properties]
name = GFS_DCNV_generic_pre
type = scheme
dependencies = machine.F
dependencies = ../../hooks/machine.F

########################################################################
[ccpp-arg-table]
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[ccpp-table-properties]
name = GFS_GWD_generic_post
type = scheme
dependencies = machine.F
dependencies = ../../hooks/machine.F

########################################################################
[ccpp-arg-table]
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[ccpp-table-properties]
name = GFS_GWD_generic_pre
type = scheme
dependencies = machine.F
dependencies = ../../hooks/machine.F

########################################################################
[ccpp-arg-table]
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0 physics/GFS_MP_generic_post.F90 → ...s/UFS_SCM_NEPTUNE/GFS_MP_generic_post.F90
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[ccpp-table-properties]
name = GFS_MP_generic_post
type = scheme
dependencies = calpreciptype.f90,machine.F
dependencies = ../../MP/calpreciptype.f90,../../hooks/machine.F

########################################################################
[ccpp-arg-table]
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0 physics/GFS_MP_generic_pre.F90 → ...ls/UFS_SCM_NEPTUNE/GFS_MP_generic_pre.F90
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