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* cmake option -DPARFLOW_ENABLE_NUOPC=ON * pass MPI communicator from cap to amps layer * add amps_EmbeddedInitFComm to convert fortran communicator to c for embedded applications * set amps coupler logging to stdout * fix target_link_libraries for pfsimulator * update target_include_directories to specify BUILD_INTERFACE * add PF NUOPC cap ESMX testing application * fork wrf_parflow.c to cpl_parflow.c * add solver_mask in cpl_parflow.c * add cplparflowexport function * export specific and zmulit from cplparflowadvance * add ExportRichards function * add GetGrid2DRichards to solver_richards.c * add GetMaskRichards to solver_richards.c * add sphdeg coords to NUOPC cap from clm vegtf * add python3 scripting to pfnuopc cap * nuopc import fields default to fill value * nuopc export fields default to model data * export ParFlow libraries to ParFlow.cmake file * update to cmake source dirs to current
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| Original file line number | Diff line number | Diff line change |
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| cmake_minimum_required (VERSION 3.5.2) | ||
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| ### Build Flags | ||
| if(CMAKE_Fortran_COMPILER_ID MATCHES "GNU") | ||
| set(CMAKE_Fortran_FLAGS_RELWITHDEBINFO "${CMAKE_Fortran_FLAGS_RELWITHDEBINFO} -fbacktrace") | ||
| set(CMAKE_Fortran_FLAGS_DEBUG "${CMAKE_Fortran_FLAGS_DEBUG} -O0 -fbacktrace -fcheck=all" ) | ||
| elseif(CMAKE_Fortran_COMPILER_ID MATCHES "Intel") | ||
| set(CMAKE_Fortran_FLAGS_RELWITHDEBINFO "${CMAKE_Fortran_FLAGS_RELWITHDEBINFO} -traceback") | ||
| set(CMAKE_Fortran_FLAGS_DEBUG "${CMAKE_Fortran_FLAGS_DEBUG} -O0 -traceback -check all") | ||
| endif() | ||
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| ### Find and Include ESMF | ||
| list(APPEND CMAKE_MODULE_PATH "${CMAKE_CURRENT_SOURCE_DIR}/cmake/modules/") | ||
| find_package(ESMF MODULE REQUIRED) | ||
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| ### Include ESMF Compiler Options | ||
| set(CMAKE_Fortran_FLAGS "${CMAKE_Fortran_FLAGS} ${ESMF_F90COMPILEOPTS}") | ||
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| set(CMAKE_Fortran_MODULE_DIRECTORY ${CMAKE_BINARY_DIR}/include) | ||
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| ### Library Files | ||
| list(APPEND pf_nuopc_files | ||
| src/pf_nuopc_cap.F90 | ||
| src/pf_nuopc_fields.F90 | ||
| src/pf_nuopc_grid.F90 | ||
| src/pf_nuopc_flags.F90 | ||
| ) | ||
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| ### New Library: parflow_nuopc | ||
| add_library(parflow_nuopc STATIC ${pf_nuopc_files}) | ||
| add_dependencies(parflow_nuopc pfsimulator) | ||
| include_directories(parflow_nuopc include) | ||
| target_link_libraries(parflow_nuopc PUBLIC ESMF) | ||
| target_link_libraries(parflow_nuopc PUBLIC pfsimulator) | ||
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| ### Install Library | ||
| install(TARGETS parflow_nuopc | ||
| EXPORT ParFlow | ||
| LIBRARY DESTINATION lib | ||
| ARCHIVE DESTINATION lib | ||
| INCLUDES DESTINATION include | ||
| ) | ||
| install(FILES ${CMAKE_Fortran_MODULE_DIRECTORY}/parflow_nuopc.mod | ||
| DESTINATION include | ||
| ) | ||
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| Original file line number | Diff line number | Diff line change |
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| @@ -0,0 +1,13 @@ | ||
| # ParFlow NUOPC Cap | ||
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| The ParFlow NUOPC Cap is a ParFlow interface wrapper for the National Unified | ||
| Operational Prediction Capability (NUOPC) coupling framework. | ||
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| [NUOPC Documentation](http://earthsystemmodeling.org/nuopc/) | ||
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| ## Build | ||
| Include -DPARFLOW\_ENABLE\_NUOPC=ON in cmake build | ||
| ``` | ||
| cmake <PARFLOW_SOURCE> \ | ||
| -DPARFLOW_ENABLE_NUOPC=ON | ||
| ``` |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,142 @@ | ||
| # - Try to find ESMF | ||
| # | ||
| # Uses ESMFMKFILE to find the filepath of esmf.mk. If this is NOT set, then this | ||
| # module will attempt to find esmf.mk. If ESMFMKFILE exists, then | ||
| # ESMF_FOUND=TRUE and all ESMF makefile variables will be set in the global | ||
| # scope. Optionally, set ESMF_MKGLOBALS to a string list to filter makefile | ||
| # variables. For example, to globally scope only ESMF_LIBSDIR and ESMF_APPSDIR | ||
| # variables, use this CMake command in CMakeLists.txt: | ||
| # | ||
| # set(ESMF_MKGLOBALS "LIBSDIR" "APPSDIR") | ||
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| # Set ESMFMKFILE as defined by system env variable. If it's not explicitly set | ||
| # try to find esmf.mk file in default locations (ESMF_ROOT, CMAKE_PREFIX_PATH, | ||
| # etc) | ||
| if(NOT DEFINED ESMFMKFILE) | ||
| if(NOT DEFINED ENV{ESMFMKFILE}) | ||
| find_path(ESMFMKFILE_PATH esmf.mk PATH_SUFFIXES lib lib64) | ||
| if(ESMFMKFILE_PATH) | ||
| set(ESMFMKFILE ${ESMFMKFILE_PATH}/esmf.mk) | ||
| message(STATUS "Found esmf.mk file ${ESMFMKFILE}") | ||
| endif() | ||
| else() | ||
| set(ESMFMKFILE $ENV{ESMFMKFILE}) | ||
| endif() | ||
| endif() | ||
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| # Only parse the mk file if it is found | ||
| if(EXISTS ${ESMFMKFILE}) | ||
| set(ESMFMKFILE ${ESMFMKFILE} CACHE FILEPATH "Path to esmf.mk file") | ||
| set(ESMF_FOUND TRUE CACHE BOOL "esmf.mk file found" FORCE) | ||
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| # Read the mk file | ||
| file(STRINGS "${ESMFMKFILE}" esmfmkfile_contents) | ||
| # Parse each line in the mk file | ||
| foreach(str ${esmfmkfile_contents}) | ||
| # Only consider uncommented lines | ||
| string(REGEX MATCH "^[^#]" def ${str}) | ||
| # Line is not commented | ||
| if(def) | ||
| # Extract the variable name | ||
| string(REGEX MATCH "^[^=]+" esmf_varname ${str}) | ||
| # Extract the variable's value | ||
| string(REGEX MATCH "=.+$" esmf_vardef ${str}) | ||
| # Only for variables with a defined value | ||
| if(esmf_vardef) | ||
| # Get rid of the assignment string | ||
| string(SUBSTRING ${esmf_vardef} 1 -1 esmf_vardef) | ||
| # Remove whitespace | ||
| string(STRIP ${esmf_vardef} esmf_vardef) | ||
| # A string or single-valued list | ||
| if(NOT DEFINED ESMF_MKGLOBALS) | ||
| # Set in global scope | ||
| set(${esmf_varname} ${esmf_vardef}) | ||
| # Don't display by default in GUI | ||
| mark_as_advanced(esmf_varname) | ||
| else() # Need to filter global promotion | ||
| foreach(m ${ESMF_MKGLOBALS}) | ||
| string(FIND ${esmf_varname} ${m} match) | ||
| # Found the string | ||
| if(NOT ${match} EQUAL -1) | ||
| # Promote to global scope | ||
| set(${esmf_varname} ${esmf_vardef}) | ||
| # Don't display by default in the GUI | ||
| mark_as_advanced(esmf_varname) | ||
| # No need to search for the current string filter | ||
| break() | ||
| endif() | ||
| endforeach() | ||
| endif() | ||
| endif() | ||
| endif() | ||
| endforeach() | ||
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| # Construct ESMF_VERSION from ESMF_VERSION_STRING_GIT | ||
| # ESMF_VERSION_MAJOR and ESMF_VERSION_MINOR are defined in ESMFMKFILE | ||
| set(ESMF_VERSION 0) | ||
| set(ESMF_VERSION_PATCH ${ESMF_VERSION_REVISION}) | ||
| set(ESMF_BETA_RELEASE FALSE) | ||
| if(ESMF_VERSION_BETASNAPSHOT MATCHES "^('T')$") | ||
| set(ESMF_BETA_RELEASE TRUE) | ||
| if(ESMF_VERSION_STRING_GIT MATCHES "^ESMF.*beta_snapshot") | ||
| set(ESMF_BETA_SNAPSHOT ${ESMF_VERSION_STRING_GIT}) | ||
| elseif(ESMF_VERSION_STRING_GIT MATCHES "^v.\..\..b") | ||
| set(ESMF_BETA_SNAPSHOT ${ESMF_VERSION_STRING_GIT}) | ||
| else() | ||
| set(ESMF_BETA_SNAPSHOT 0) | ||
| endif() | ||
| message(STATUS "Detected ESMF Beta snapshot: ${ESMF_BETA_SNAPSHOT}") | ||
| endif() | ||
| set(ESMF_VERSION "${ESMF_VERSION_MAJOR}.${ESMF_VERSION_MINOR}.${ESMF_VERSION_PATCH}") | ||
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| # Find the ESMF library | ||
| if(USE_ESMF_STATIC_LIBS) | ||
| find_library(ESMF_LIBRARY_LOCATION NAMES libesmf.a PATHS ${ESMF_LIBSDIR} NO_DEFAULT_PATH) | ||
| if(ESMF_LIBRARY_LOCATION MATCHES "ESMF_LIBRARY_LOCATION-NOTFOUND") | ||
| message(WARNING "Static ESMF library (libesmf.a) not found in \ | ||
| ${ESMF_LIBSDIR}. Try setting USE_ESMF_STATIC_LIBS=OFF") | ||
| endif() | ||
| if(NOT TARGET ESMF) | ||
| add_library(ESMF STATIC IMPORTED) | ||
| endif() | ||
| else() | ||
| find_library(ESMF_LIBRARY_LOCATION NAMES esmf PATHS ${ESMF_LIBSDIR} NO_DEFAULT_PATH) | ||
| if(ESMF_LIBRARY_LOCATION MATCHES "ESMF_LIBRARY_LOCATION-NOTFOUND") | ||
| message(WARNING "ESMF library not found in ${ESMF_LIBSDIR}.") | ||
| endif() | ||
| if(NOT TARGET ESMF) | ||
| add_library(ESMF UNKNOWN IMPORTED) | ||
| endif() | ||
| endif() | ||
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| # Add ESMF include directories | ||
| set(ESMF_INCLUDE_DIRECTORIES "") | ||
| separate_arguments(_ESMF_F90COMPILEPATHS UNIX_COMMAND ${ESMF_F90COMPILEPATHS}) | ||
| foreach(_ITEM ${_ESMF_F90COMPILEPATHS}) | ||
| string(REGEX REPLACE "^-I" "" _ITEM "${_ITEM}") | ||
| list(APPEND ESMF_INCLUDE_DIRECTORIES ${_ITEM}) | ||
| endforeach() | ||
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| # Add ESMF link libraries | ||
| string(STRIP "${ESMF_F90LINKRPATHS} ${ESMF_F90ESMFLINKRPATHS} ${ESMF_F90ESMFLINKPATHS} ${ESMF_F90LINKPATHS} ${ESMF_F90LINKLIBS} ${ESMF_F90LINKOPTS}" ESMF_INTERFACE_LINK_LIBRARIES) | ||
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| # Finalize find_package | ||
| include(FindPackageHandleStandardArgs) | ||
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| find_package_handle_standard_args( | ||
| ${CMAKE_FIND_PACKAGE_NAME} | ||
| REQUIRED_VARS ESMF_LIBRARY_LOCATION | ||
| ESMF_INTERFACE_LINK_LIBRARIES | ||
| ESMF_F90COMPILEPATHS | ||
| VERSION_VAR ESMF_VERSION) | ||
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| set_target_properties(ESMF PROPERTIES | ||
| IMPORTED_LOCATION "${ESMF_LIBRARY_LOCATION}" | ||
| INTERFACE_INCLUDE_DIRECTORIES "${ESMF_INCLUDE_DIRECTORIES}" | ||
| INTERFACE_LINK_LIBRARIES "${ESMF_INTERFACE_LINK_LIBRARIES}") | ||
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| else() | ||
| set(ESMF_FOUND FALSE CACHE BOOL "esmf.mk file NOT found" FORCE) | ||
| message(WARNING "ESMFMKFILE ${ESMFMKFILE} not found. Try setting ESMFMKFILE \ | ||
| to esmf.mk location.") | ||
| endif() |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,30 @@ | ||
| !------------------------------------------------------------------------------- | ||
| ! Define Defaults | ||
| !------------------------------------------------------------------------------- | ||
| #define CONTEXT line=__LINE__,file=__FILE__ | ||
| #define PASSTHRU msg=ESMF_LOGERR_PASSTHRU,CONTEXT | ||
| #define ESMF_STDERRORCHECK(rc) ESMF_LogFoundError(rcToCheck=rc,msg=ESMF_LOGERR_PASSTHRU,line=__LINE__,file=__FILE__) | ||
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| !------------------------------------------------------------------------------- | ||
| ! Define ESMF real kind to match Appplications single/double precision | ||
| !------------------------------------------------------------------------------- | ||
| #if defined(REAL4) | ||
| #define ESMF_KIND_FIELD ESMF_KIND_R4 | ||
| #define ESMF_KIND_COORD ESMF_KIND_R4 | ||
| #define ESMF_DEFAULT_VALUE 9.99e20_ESMF_KIND_R8 | ||
| #define ESMF_TYPEKIND_FIELD ESMF_TYPEKIND_R4 | ||
| #define ESMF_TYPEKIND_COORD ESMF_TYPEKIND_R4 | ||
| #elif defined(REAL8) | ||
| #define ESMF_KIND_FIELD ESMF_KIND_R8 | ||
| #define ESMF_KIND_COORD ESMF_KIND_R8 | ||
| #define ESMF_DEFAULT_VALUE 9.99e20_ESMF_KIND_R8 | ||
| #define ESMF_TYPEKIND_FIELD ESMF_TYPEKIND_R8 | ||
| #define ESMF_TYPEKIND_COORD ESMF_TYPEKIND_R8 | ||
| #else | ||
| #define ESMF_KIND_FIELD ESMF_KIND_R4 | ||
| #define ESMF_KIND_COORD ESMF_KIND_R8 | ||
| #define ESMF_DEFAULT_VALUE 9.99e20_ESMF_KIND_R8 | ||
| #define ESMF_TYPEKIND_FIELD ESMF_TYPEKIND_R4 | ||
| #define ESMF_TYPEKIND_COORD ESMF_TYPEKIND_R8 | ||
| #endif | ||
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