Improve stability of CI/CD pipelines (#4917)

Description of changes:
- update the pylint config file (fixes #4918)
- C++: fix several instances of `-Wunused-parameter` and `-Wsign-compare`
- CMake: fix linker warnings in ScaFaCoS and Kokkos, simplify configuration of the `espresso::scafacos` target
- CMake: simplify dependency tree of `espresso::core`, `espresso::walberla`, `espresso::walberla_cuda` targets
- address Jupyter warnings with a newer Docker image where the Jupyter environment is properly set up
- bump Node.js to v20 to address GitHub Actions deprecation warnings
- add jq dependency to address GitHub bot script failures

.github/workflows/deploy.yml

@@ -16,7 +16,7 @@ jobs:
       - name: Install pandoc
         uses: r-lib/actions/setup-pandoc@v2
       - name: Setup SSH agent
-        uses: webfactory/ssh-agent@v0.7.0
+        uses: webfactory/ssh-agent@v0.9.0
         with:
           ssh-private-key: ${{ secrets.GH_PAGES_SSH_PRIVATE_KEY }}
       - name: Checkout

.github/workflows/push_pull.yml

@@ -35,7 +35,7 @@ jobs:
   debian:
     runs-on: ubuntu-latest
     container:
-      image: ghcr.io/espressomd/docker/debian:7843821c7cfe66dc8b718bb4041eba52adaa2df0-base-layer
+      image: ghcr.io/espressomd/docker/debian:f7f8ef2c0ca93c67aa16b9f91785492fb04ecc1b-base-layer
       credentials:
          username: ${{ github.actor }}
          password: ${{ secrets.github_token }}
@@ -74,7 +74,7 @@ jobs:
     runs-on: ubuntu-latest
     if: ${{ github.repository == 'espressomd/espresso' }}
     container:
-      image: ghcr.io/espressomd/docker/ubuntu-wo-dependencies:7843821c7cfe66dc8b718bb4041eba52adaa2df0-base-layer
+      image: ghcr.io/espressomd/docker/ubuntu-wo-dependencies:f7f8ef2c0ca93c67aa16b9f91785492fb04ecc1b-base-layer
       credentials:
          username: ${{ github.actor }}
          password: ${{ secrets.github_token }}

.gitlab-ci.yml

@@ -1,4 +1,4 @@
-image: ghcr.io/espressomd/docker/ubuntu:7843821c7cfe66dc8b718bb4041eba52adaa2df0
+image: ghcr.io/espressomd/docker/ubuntu:f7f8ef2c0ca93c67aa16b9f91785492fb04ecc1b
 
 stages:
   - prepare
@@ -18,7 +18,7 @@ stages:
 
 .notification_job_template: &notification_job_definition
   <<: *global_job_definition
-  image: ghcr.io/espressomd/docker/fedora:7843821c7cfe66dc8b718bb4041eba52adaa2df0
+  image: ghcr.io/espressomd/docker/fedora:f7f8ef2c0ca93c67aa16b9f91785492fb04ecc1b
   variables:
     GIT_SUBMODULE_STRATEGY: none
   before_script:
@@ -145,7 +145,7 @@ no_rotation:
 fedora:40:
   <<: *global_job_definition
   stage: build
-  image: ghcr.io/espressomd/docker/fedora:7843821c7cfe66dc8b718bb4041eba52adaa2df0
+  image: ghcr.io/espressomd/docker/fedora:f7f8ef2c0ca93c67aa16b9f91785492fb04ecc1b
   variables:
      with_cuda: 'false'
      with_gsl: 'false'