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* fix cuda import position * fix chimera pathological * fix chimera overlap python * fix search to clear proper cache * add Exhaustive * restore NNlib * comment out working tests (for now) * fixed hamming tests * fixed hamming_distance in search and tests * fix testów * uncoment all tests * search chimera full passes * fixed the chimera_pathological_Z2 test * bugfix * fix repeated function definitions * comment out long tests * moved gauges to experimental so that they dont stop release (feature is not ready) * uncomment tests * fix deps * remove prints * make tests pass again * update exhaustive versions * update CI workflow --------- Co-authored-by: tomsmierz <[email protected]>
lpawela
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Apr 29, 2024
* ideas * test zipper * test measure_memory * test zipper * test zipper * benchmarks * changed n, m, t so that they work for Z4 * bench pegasus * clean up * device * zipper cuda * fix kwargs * bench * cuda tensors * tests * add zipper contractor * adjust * tests pass * tests pass * add Zipper contractor * add Zipper Strategy in tests * crashing example * benchmark pegasus * Revert "benchmark pegasus" This reverts commit 8134dbe. * benchmark pegasus * benchmarks zephyr and pegasus * add squarestar2_zephyr * clean up tests * rewrite cluster assignment rule for zephyr * added minimal zephyr example * added readme for zephyr * added minimal pegasus * added AC3 instances for zephyr * added Z12 and Z16 * added Z8 * gauges on gpu * reordering * test * square * squarestar * test * test * clean up * tests * onGPU * precompute cond squarestar2 * add sampling and instances * overlap between states in sampling * clean up flags onGPU * add flag * correct instances of P4 AC3 * lp * sitetensor * SiteTensor Sparse * VirtualTensor * stash * new PoolOfProjectors * cplex bench (possible error) * CBFM-P instances * clean cplex bench * refactor cpxl bench * clean up * fix a bug * hunting for a bug * qubo works, but not vectorized * huntig bugs * fix a bug * moved CBFM-P to correct folders * benchamrking with cplex * floats bugfix * added time column for results * batched_mul square_star2 * added instances P8 CBFM-P * measure_Spectrum * bench pegasus CBFM-P * mps memory * reduced_env on cpu * matyas instances * results for pegasus * RAU for P8 * aggregated bench results for P4 * test memory allocation of basis operations * added tests for reshape * slicing bench * fixed typo * precompute * working * tests * testing zipper * new parameters (svd and var) in contractor * add Schmidt values in solution * change pegasus_bench2.jl * create output folder * clean up * jdl example * bugfix * zipper parameters * P12 and P16 for CBFM-P * Dtemp_multiplier in MpsParameters * zipper_var - SVDTruncate not working * zipper_var * ploting results * sb_plot changes * method in MpsParams * example for truncated_fg * truncate fg - small examples * truncate_factor_graph * pegasus bench with truncation * bench pegasus with truncated fg * agregated results from dwave for Z3 and Z4 * results PT P4 * created scripts multi_gpu pararel computing * add test for belief propagation * agregated data for Z3 i Z4 * change of names in truncate factor graph * example truncation * test truncate * separate truncation and BP * separate truncation and BP another bench * modify test on BP truncation * draft droplets * draft droplets * separate bp and truncation in bench * added EmptyDroplets and its usage * modified to comply with new Solution struct * added symbol for droplets in search * working tests * droplets * add xor-droplets * single layer drop * add Hamming distance * droplets * hamming * add decode_to_spin * add pathological test for droplets * spinglelayerdroplet * diversity metrics * mo * diversity * droplets add tests * add perm_droplet * add tests hamming * clean up diversity metric * Z2 symmetry in search * rename factor_graph to clustered_hamiltonian * spins in Solution * remove decode_to_spins * split bond_energy * PoolOfProjectors in clustered_hamiltonian * rename square2 and squarestar2 * Z2 symmetry * split long lines in src * move to attic * rename tests * move poster to attic * Z2 symmetry * add docs * docs * add docs for operations and contractor * add docs for search and PEPS * add another merge method * add condition on hamming dist on boundaries * merge_branches_blur * add square instances with diagonals and example * add graphs representing instances * clean up toml * clean up * moved parts of search.jl to droplets.jl * change hamming dist * add docs for droplets.jl * moved some functions from contractor.jl to util.jl * bugfix (commas in export statement) * add test for diagonal lattice * add the docs for PEPS.jl * added descriptions to some files * add docs for search, util and square_cross_double_node * Added simple example for running pegasus graph * add the docs * test for random markov field * add the docs * fix the bug in docs * add droplets for RMF * fix the bug in rmf * add flag for RMF in Contractor * add docs * benchmarking_script * add the docs * add depth in Contractor * add the docs * add the docs * add newest version * add png images * changed julia dependency to 1.8 and 1.9 only * changed versions * update versions * add RAU benchmark * clean bench script * benchamark for RAU P8 RAU 3-5 * fixed "droplets not defined" error * fixed droplets not defined * clean up stuff * bugfix * add instances on a square grid * add instances on a square grid * add benchmarks: square and zephyr instances * add 100 square instances * check ground state after BP * clean up * add P8 RCO bench * script to calculate and draw random markoc field * clean up * optimizing mrf * bugfix * docs add plots * link added * add P8 CBFM-P bench * bench without MPI * stability * LightGraphsfix versions, switch to Graphs * fix caches * mwe for CUDA problems * update mwe to more readable * Fix tests and make the pass (#23) * fix cuda import position * fix chimera pathological * fix chimera overlap python * fix search to clear proper cache * add Exhaustive * restore NNlib * comment out working tests (for now) * fixed hamming tests * fixed hamming_distance in search and tests * fix testów * uncoment all tests * search chimera full passes * fixed the chimera_pathological_Z2 test * bugfix * fix repeated function definitions * comment out long tests * moved gauges to experimental so that they dont stop release (feature is not ready) * uncomment tests * fix deps * remove prints * make tests pass again * update exhaustive versions * update CI workflow --------- Co-authored-by: tomsmierz <[email protected]> * uncomment all tests * remove benchmarks * remove test attic * remove mps stuff --------- Co-authored-by: marekrams <[email protected]> Co-authored-by: annamariadziubyna <[email protected]> Co-authored-by: bartekGardas <[email protected]> Co-authored-by: annamariadziubyna <[email protected]> Co-authored-by: Łukasz Pawela <[email protected]> Co-authored-by: Łukasz Pawela <[email protected]>
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When merging this, it is worth deciding what to do with all the instances and results and other files, as they are quite big.