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25 Open 36 Closed
25 Open 36 Closed
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Issues list

What are pair and single files?
#88 opened Jul 20, 2024 by MichaelHinrichs
Recent SWI Prolog breaks DCG test?
#86 opened Sep 17, 2023 by ihh
Cannot specify multiple targets using a variable
#82 opened Oct 8, 2020 by rulatir
Silently unsupported GNU Make feature: Rules with Grouped Targets
#81 opened Oct 7, 2020 by rulatir
If a deep dependency fails with "no way to make", only a direct dependency of the main goal is mentioned
#80 opened Jun 24, 2020 by rulatir
Target-specific variables unsupported or broken GNU make compatibility
#79 opened Jun 4, 2020 by rulatir
3
Multiple outputs - correct pattern
#78 opened Feb 19, 2020 by samwalrus
1
Build failure should result in the deletion of unbuilt targets Bug GNU make compatibility
#77 opened Dec 18, 2019 by ihh
Refactor the README into readthedocs
#71 opened Feb 24, 2019 by cmungall
@cmungall
Biomake macro for MD5 hash of a file Feature request
#68 opened Oct 10, 2018 by ihh
More Prolog recipes for extending rules Documentation
#67 opened Oct 1, 2018 by ihh
@ihh
Add biomake to bioconda
#65 opened Aug 3, 2018 by cmungall
@cmungall
Welcome message should draw version number from pack.pl Documentation
#63 opened Jun 29, 2018 by cmungall
@cmungall
Retain the job number Feature request
#59 opened Jan 19, 2018 by sjackman
2
SLURM: Option to join stdout and stderr Feature request
#58 opened Jan 19, 2018 by sjackman
3
Pattern rules with multiple targets GNU make compatibility
#57 opened Jan 18, 2018 by sjackman
Implement multiple rules per target Feature request GNU make compatibility
#56 opened Jan 18, 2018 by sjackman
Implement static pattern rules Feature request GNU make compatibility
#55 opened Jan 18, 2018 by sjackman
Observe the SHELL environment variable GNU make compatibility
#54 opened Jan 18, 2018 by sjackman
4
biomake -Q slurm prints an error when the subdirectory does not exist Bug
#53 opened Jan 18, 2018 by sjackman
14
Prefer more specific rules over more general ones GNU make compatibility
#51 opened Jan 16, 2018 by sjackman
Use built-in hash predicates of library(crypto) for portability Prolog portability
#45 opened Sep 25, 2017 by triska
1
Implement order-only prerequisites GNU make compatibility
#41 opened Mar 15, 2017 by ihh
Cyclic dependency makes biomake sad Bug GNU make compatibility
#40 opened Mar 15, 2017 by ihh
plugin idea: automatic metadata annotation Feature request
#15 opened Dec 10, 2016 by cmungall
@cmungall
5
ProTip! Exclude everything labeled bug with -label:bug.