MT codon tables and Bayesian ACMG
- Updated Jannovar version to 0.41 to fix incorrect MT codon table usage #521
- Downgraded PM2 - PM2_Supporting for variants lacking frequency information #502.
- Updated Acgs2020Classifier and Acmg2015Classifier to allow for PVS1 and PM2_Supporting to be sufficient to trigger LIKELY_PATHOGENIC
- Updated AcmgEvidence to fit a Bayesian points-based system #514
- Removed ASJ, FIN, OTH ExAC and gnomAD populations from presets and examples #513.
- Fix for regression causing
<INV>
variants to be incorrectly down-ranked - Fix for issue #486 where VCF output includes whitespace in INFO field.
- Logs will now display elapsed time correctly if an analysis runs over an hour (!).
Full Changelog: 13.2.1...13.3.0