Set 2 characters indentation level for YAML files

.yamllint.yaml

@@ -6,6 +6,9 @@ ignore: |
   ui/pnpm-lock.yaml
 
 rules:
+  indentation:
+    spaces: 2
+
   # Match line length to the one set by `black` the Python formatter
   line-length:
     max: 88

test/HardwareObjectsMockup.xml/gphl/gphl-setup.yml

@@ -1,95 +1,95 @@
 ---
 
-# yamllint disable rule:comments
-# yamllint disable rule:comments-indentation
-# yamllint disable rule:line-length
-
 _initialise_class:
-    class: mxcubecore.HardwareObjects.Gphl.GphlWorkflowConnection.GphlWorkflowConnection
+  class: mxcubecore.HardwareObjects.Gphl.GphlWorkflowConnection.GphlWorkflowConnection
 
 directory_locations:
-    # Directory locations. Can also be used with ${} syntax in this file
-    GPHL_INSTALLATION: /alt/rhfogh/Software/GPhL/gphl_release
-    # GPHL_WRAPPERS: /data/users/p3l-gleb1/gphl/
+  # Directory locations. Can also be used with ${} syntax in this file
+  GPHL_INSTALLATION: /alt/rhfogh/Software/GPhL/gphl_release
+  # GPHL_WRAPPERS: /data/users/p3l-gleb1/gphl/
 
 
 # If set, run workflow through ssh with selected options
 # and quote parameters as appropriate
 # NB The Host option is mandatory
 # ConfigFile is the ssh configuration file, passed to ssh with the -F option
-#ssh_options:
-#    Host: lonsdale
-#    IdentityFile: /home/rhfogh/.ssh/wf_test_id
-#    User: rhfogh
-#    StrictHostKeyChecking: no
-#    ConfigFile: /path/to/ssh/config/file
-
-#    Directory used for GPhL workflow persistence data and workflow logs:
-#    Used to set the wdir workflow option
-#    If relative designates a subdirectory under Session.get_process_directory()
-#    If absolute taken as it stands
+# ssh_options:
+#   Host: lonsdale
+#   IdentityFile: /home/rhfogh/.ssh/wf_test_id
+#   User: rhfogh
+#   StrictHostKeyChecking: no
+#   ConfigFile: /path/to/ssh/config/file
+
+# Directory used for GPhL workflow persistence data and workflow logs:
+# Used to set the wdir workflow option
+# If relative designates a subdirectory under Session.get_process_directory()
+# If absolute taken as it stands
 gphl_subdir: GPHL
-#    root name of persistence layer file; suffix'.xml. is added
+# root name of persistence layer file; suffix'.xml. is added
 gphl_persistname: persistence
 
-#Hosts and ports for py4j java-python gateway, all OPTIONAL
-#If not set will use py4j default values, which are as given below
-#NB python_host is set automatically to localhost or socket.gethostname()
-#NB java_host is not needed as all communication is effectively one-way
-#connection_parameters:
-#    python_port: 25334
-#    java_port: 25333
+# Hosts and ports for py4j java-python gateway, all OPTIONAL
+# If not set will use py4j default values, which are as given below
+# NB python_host is set automatically to localhost or socket.gethostname()
+# NB java_host is not needed as all communication is effectively one-way
+# connection_parameters:
+#   python_port: 25334
+#   java_port: 25333
 
-#NB Non-absolute file names are interpreted relative to one of the
-#HardwareRepository directories on the lookup path
+# NB Non-absolute file names are interpreted relative to one of the
+# HardwareRepository directories on the lookup path
 
 software_paths:
-    # Mandatory. Directory with workflow config input, e.g. instrumentation.nml
-    gphl_beamline_config: gphl/config_esrf_id30b
+  # Mandatory. Directory with workflow config input, e.g. instrumentation.nml
+  gphl_beamline_config: gphl/config_esrf_id30b
 
-    # MANDATORY for CCP4 => $GPHL_CCP4_PATH/bin/ccp4.setup-sh,
-    # unless already sourced in environment
-    GPHL_CCP4_PATH: /alt/rhfogh/Software/CCP4/latest/bin
+  # MANDATORY for CCP4 => $GPHL_CCP4_PATH/bin/ccp4.setup-sh,
+  # unless already sourced in environment
+  GPHL_CCP4_PATH: /alt/rhfogh/Software/CCP4/latest/bin
 
-    # MANDATORY for XDS => $GPHL_XDS_PATH/xds_par
-    # unless already sourced in environment
-    GPHL_XDS_PATH: /alt/rhfogh/Software/XDS/latest
+  # MANDATORY for XDS => $GPHL_XDS_PATH/xds_par
+  # unless already sourced in environment
+  GPHL_XDS_PATH: /alt/rhfogh/Software/XDS/latest
 
-    # OPTIONAL for java binary => defaults to just 'java'
-#    java_binary: "/alt/rhfogh/Software/GPhL/mxcube_setup/java-11-openjdk-11/bin/java"
+  # OPTIONAL for java binary => defaults to just 'java'
+  # java_binary: "/alt/rhfogh/Software/GPhL/mxcube_setup/java-11-openjdk-11/bin/java"
 
-    # gphl test samples directory - for collection emulation
-    gphl_test_samples: gphl/test_samples
+  # gphl test samples directory - for collection emulation
+  gphl_test_samples: gphl/test_samples
 
-    #Location of installation used for processing queue (if not reachable from BCS computer.
-    #Passed as environmental variable GPHL_PROC_INSTALLATION. Optional
-#    gphl_wf_processing_installation: /users/pkeller/GPhL-ESRF/exe
+  # Location of installation used for processing queue
+  # (if not reachable from BCS computer).
+  # Passed as environmental variable GPHL_PROC_INSTALLATION. Optional
+  # gphl_wf_processing_installation: /users/pkeller/GPhL-ESRF/exe
 
 # Software paths that are passed to global phasing workflow as java properties
 # Used to specify locations of alternative executables (wrappers)
 # More (unused) properties are described in the ASTRA workflow documentation
 software_properties:
-    #Location of GPhL .license directory
-    #defaults to GPHL_INSTALLATION
-    #Only needed if you do NOT use the gphl installation wrapper scripts in .../exe :
-    #        co.gphl.wf.bdg_licence_dir: "{GPHL_RELEASE}/gphl_release/latest"
-
-    # MANDATORY pending change in workflow
-    co.gphl.wf.stratcal.bin: "{GPHL_INSTALLATION}/exe/run_stratcal_wrap.py"
-
-    # OPTIONAL location of alternative executables (wrappers) supported by the workflow
-    # Each has an option (rarely used)  to specify a specific license directory -->
-    # co.gphl.wf.process.bin: {GPHL_WRAPPERS}/scripts/aP_wf_process
-    # co.gphl.wf.process.bdg_licence_dir/fill/me/in
-    # co.gphl.wf.diffractcal.bin: {GPHL_WRAPPERS}/scripts/aP_wf_rotcal
-    # co.gphl.wf.diffractcal.bdg_licence_dir/fill/me/in
-    # co.gphl.wf.simcal_predict.bin: {GPHL_WRAPPERS}/scripts/simcal_predict
-    # co.gphl.wf.simcal_predict.bdg_licence_dir/fill/me/in
-    # co.gphl.wf.transcal.bin: {GPHL_WRAPPERS}/scripts/transcal
-    # co.gphl.wf.transcal.bdg_licence_dir/fill/me/in
-    # co.gphl.wf.recen.bin: {GPHL_WRAPPERS}/scripts/recen
-    # co.gphl.wf.recen.bdg_licence_dir/fill/me/in
-
-    # OPTIONAL. simcal *binary* For Mock collection emulation only. Not used by ASTRA workflow
-    co.gphl.wf.simcal.bin: /alt/rhfogh/Software/GPhL/nightly_20240206/Files_workflow_TRUNK_alpha-bdg/autoPROC/bin/linux64/simcal
-    co.gphl.wf.simcal.bdg_licence_dir: /alt/rhfogh/Software/GPhL/nightly_20240206/Files_workflow_TRUNK_alpha-bdg
+  # Location of GPhL .license directory
+  # defaults to GPHL_INSTALLATION
+  # Only needed if you do NOT use the gphl installation wrapper scripts in .../exe :
+  # co.gphl.wf.bdg_licence_dir: "{GPHL_RELEASE}/gphl_release/latest"
+
+  # MANDATORY pending change in workflow
+  co.gphl.wf.stratcal.bin: "{GPHL_INSTALLATION}/exe/run_stratcal_wrap.py"
+
+  # OPTIONAL location of alternative executables (wrappers) supported by the workflow
+  # Each has an option (rarely used)  to specify a specific license directory -->
+  # co.gphl.wf.process.bin: {GPHL_WRAPPERS}/scripts/aP_wf_process
+  # co.gphl.wf.process.bdg_licence_dir/fill/me/in
+  # co.gphl.wf.diffractcal.bin: {GPHL_WRAPPERS}/scripts/aP_wf_rotcal
+  # co.gphl.wf.diffractcal.bdg_licence_dir/fill/me/in
+  # co.gphl.wf.simcal_predict.bin: {GPHL_WRAPPERS}/scripts/simcal_predict
+  # co.gphl.wf.simcal_predict.bdg_licence_dir/fill/me/in
+  # co.gphl.wf.transcal.bin: {GPHL_WRAPPERS}/scripts/transcal
+  # co.gphl.wf.transcal.bdg_licence_dir/fill/me/in
+  # co.gphl.wf.recen.bin: {GPHL_WRAPPERS}/scripts/recen
+  # co.gphl.wf.recen.bdg_licence_dir/fill/me/in
+
+  # OPTIONAL. simcal *binary* For Mock collection emulation only.
+  # Not used by ASTRA workflow
+  # yamllint disable-line rule:line-length
+  co.gphl.wf.simcal.bin: /alt/rhfogh/Software/GPhL/nightly_20240206/Files_workflow_TRUNK_alpha-bdg/autoPROC/bin/linux64/simcal
+  # yamllint disable-line rule:line-length
+  co.gphl.wf.simcal.bdg_licence_dir: /alt/rhfogh/Software/GPhL/nightly_20240206/Files_workflow_TRUNK_alpha-bdg