build: Use google deepvariant

Choosing to do this so they get automatically bumped by renovate in the future.
fellen31 · Jan 8, 2025 · 5c0366f · 5c0366f
1 parent b0ea7fc
commit 5c0366f
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Showing 6 changed files with 6 additions and 6 deletions.
diff --git a/modules/nf-core/deepvariant/callvariants/main.nf b/modules/nf-core/deepvariant/callvariants/main.nf
@@ -4,7 +4,7 @@ process DEEPVARIANT_CALLVARIANTS {
     label 'process_high'
 
     //Conda is not supported at the moment
-    container "nf-core/deepvariant:1.8.0"
+    container "docker.io/google/deepvariant:1.8.0"
 
     input:
     tuple val(meta), path(make_examples_tfrecords)

diff --git a/modules/nf-core/deepvariant/main.nf b/modules/nf-core/deepvariant/main.nf
@@ -16,7 +16,7 @@ process DEEPVARIANT {
     tag "$meta.id"
     label 'process_high'
 
-    container "nf-core/deepvariant:1.8.0"
+    container "docker.io/google/deepvariant:1.8.0"
 
     input:
     tuple val(meta), path(input), path(index), path(intervals)

diff --git a/modules/nf-core/deepvariant/makeexamples/main.nf b/modules/nf-core/deepvariant/makeexamples/main.nf
@@ -3,7 +3,7 @@ process DEEPVARIANT_MAKEEXAMPLES {
     label 'process_high'
 
     //Conda is not supported at the moment
-    container "nf-core/deepvariant:1.8.0"
+    container "docker.io/google/deepvariant:1.8.0"
 
     input:
     tuple val(meta), path(input), path(index), path(intervals)

diff --git a/modules/nf-core/deepvariant/postprocessvariants/main.nf b/modules/nf-core/deepvariant/postprocessvariants/main.nf
@@ -3,7 +3,7 @@ process DEEPVARIANT_POSTPROCESSVARIANTS {
     label 'process_medium'
 
     //Conda is not supported at the moment
-    container "nf-core/deepvariant:1.8.0"
+    container "docker.io/google/deepvariant:1.8.0"
 
     input:
     tuple val(meta), path(variant_calls_tfrecord_files), path(gvcf_tfrecords)

diff --git a/modules/nf-core/deepvariant/rundeepvariant/main.nf b/modules/nf-core/deepvariant/rundeepvariant/main.nf
@@ -6,7 +6,7 @@ process DEEPVARIANT_RUNDEEPVARIANT {
     // https://github.com/bioconda/bioconda-recipes/pull/45214#issuecomment-1890937836
     // BUG https://github.com/nf-core/modules/issues/1754
     // BUG https://github.com/bioconda/bioconda-recipes/issues/30310
-    container "nf-core/deepvariant:1.8.0"
+    container "docker.io/google/deepvariant:1.8.0"
 
     input:
     tuple val(meta), path(input), path(index), path(intervals)

diff --git a/modules/nf-core/deepvariant/vcfstatsreport/main.nf b/modules/nf-core/deepvariant/vcfstatsreport/main.nf
@@ -6,7 +6,7 @@ process DEEPVARIANT_VCFSTATSREPORT {
     // https://github.com/bioconda/bioconda-recipes/pull/45214#issuecomment-1890937836
     // BUG https://github.com/nf-core/modules/issues/1754
     // BUG https://github.com/bioconda/bioconda-recipes/issues/30310
-    container "nf-core/deepvariant:1.8.0"
+    container "docker.io/google/deepvariant:1.8.0"
 
     input:
     tuple val(meta), path(vcf)