Add Revio BAM test data and a multisample-BAM samplesheet (genomic-me…

…dicine-sweden#50) Add BAM test data and a multisample-BAM samplesheet
fellen31 · Mar 28, 2024 · 5ac4d93 · 5ac4d93
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -9,6 +9,7 @@ Initial release of genomic-medicine-sweden/skierfe, created with the [nf-core](h
 
 ### `Added`
 
+- Added Revio BAM test data [#50](https://github.com/genomic-medicine-sweden/skierfe/pull/50)
 - Update template to 2.13.1 [#38](https://github.com/genomic-medicine-sweden/skierfe/pull/38)
 - Update pipeline to run with a small test dataset [#35](https://github.com/genomic-medicine-sweden/skierfe/pull/35)
 - Added test data and test profile [#33](https://github.com/genomic-medicine-sweden/skierfe/pull/33)

diff --git a/assets/samplesheet_multisample_bam.csv b/assets/samplesheet_multisample_bam.csv
@@ -0,0 +1,3 @@
+sample,file,family_id,paternal_id,maternal_id,sex,phenotype
+HG002_Revio_A,https://raw.githubusercontent.com/genomic-medicine-sweden/skierfe/dev/assets/test_data/HG002_PacBio_Revio.bam,FAM,XXX,YYY,1,1
+HG002_Revio_B,https://raw.githubusercontent.com/genomic-medicine-sweden/skierfe/dev/assets/test_data/HG002_PacBio_Revio.bam,FAM,XXX,YYY,1,1
diff --git a/assets/test_data/HG002_PacBio_Revio.bam b/assets/test_data/HG002_PacBio_Revio.bam