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changing out the slides for more daseh specific updates
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@carriewright11
carriewright11 committed Sep 30, 2024
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32 changes: 16 additions & 16 deletions modules/Reproducibility/Reproducibility.Rmd
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Expand Up @@ -11,7 +11,7 @@ knitr::opts_chunk$set(echo = FALSE, message = FALSE, comment=FALSE, warning=FALS
```

```{r}
# from these slides: https://docs.google.com/presentation/d/1-cauITbscmnDEDt5IqrZOLlCjyhzEOZY5fqwVY7l8tQ/edit?usp=sharing
# from these slides: https://docs.google.com/presentation/d/1nV7x0mIIE4oWVKxpv4qJNvO17y51MajsERGtzR2qClk/edit?usp=sharing
library(knitr)
opts_chunk$set(comment = "")
library(readr)
Expand All @@ -23,36 +23,36 @@ install.packages("ottrpal", repos = "https://cloud.r-project.org", quiet = TRUE)
library(ottrpal)
```

## What's Reproducibility
## What is Reproducibility

```{r, fig.alt="session info", out.width = "80%", echo = FALSE, fig.align='center'}
ottrpal::include_slide("https://docs.google.com/presentation/d/1-cauITbscmnDEDt5IqrZOLlCjyhzEOZY5fqwVY7l8tQ/edit#slide=id.gf1accd298e_0_146")
ottrpal::include_slide("https://docs.google.com/presentation/d/1nV7x0mIIE4oWVKxpv4qJNvO17y51MajsERGtzR2qClk/edit#slide=id.gf1accd298e_0_146")
```

Content adapted from [Candace Savonen](https://www.cansavvy.com/).

##

```{r, fig.alt="session info", out.width = "80%", echo = FALSE, fig.align='center'}
ottrpal::include_slide("https://docs.google.com/presentation/d/1-cauITbscmnDEDt5IqrZOLlCjyhzEOZY5fqwVY7l8tQ/edit#slide=id.gf1accd298e_0_0")
ottrpal::include_slide("https://docs.google.com/presentation/d/1nV7x0mIIE4oWVKxpv4qJNvO17y51MajsERGtzR2qClk/edit#slide=id.gf1accd298e_0_0")
```

##

```{r, fig.alt="session info", out.width = "80%", echo = FALSE, fig.align='center'}
ottrpal::include_slide("https://docs.google.com/presentation/d/1-cauITbscmnDEDt5IqrZOLlCjyhzEOZY5fqwVY7l8tQ/edit#slide=id.gf1accd298e_0_413")
ottrpal::include_slide("https://docs.google.com/presentation/d/1nV7x0mIIE4oWVKxpv4qJNvO17y51MajsERGtzR2qClk/edit#slide=id.gf1accd298e_0_413")
```

##

```{r, fig.alt="session info", out.width = "80%", echo = FALSE, fig.align='center'}
ottrpal::include_slide("https://docs.google.com/presentation/d/1-cauITbscmnDEDt5IqrZOLlCjyhzEOZY5fqwVY7l8tQ/edit#slide=id.gf1accd298e_0_368")
ottrpal::include_slide("https://docs.google.com/presentation/d/1nV7x0mIIE4oWVKxpv4qJNvO17y51MajsERGtzR2qClk/edit#slide=id.gf1accd298e_0_368")
```

##

```{r, fig.alt="session info", out.width = "80%", echo = FALSE, fig.align='center'}
ottrpal::include_slide("https://docs.google.com/presentation/d/1-cauITbscmnDEDt5IqrZOLlCjyhzEOZY5fqwVY7l8tQ/edit#slide=id.gf1accd298e_0_464")
ottrpal::include_slide("https://docs.google.com/presentation/d/1nV7x0mIIE4oWVKxpv4qJNvO17y51MajsERGtzR2qClk/edit#slide=id.gf1accd298e_0_464")
```

## Reproducibility vs Repeatability vs Replicability
Expand All @@ -64,50 +64,50 @@ knitr::include_graphics("images/reproducibility.png")
## Why Reproducibility is important...

```{r, fig.alt="session info", out.width = "80%", echo = FALSE, fig.align='center'}
ottrpal::include_slide("https://docs.google.com/presentation/d/1-cauITbscmnDEDt5IqrZOLlCjyhzEOZY5fqwVY7l8tQ/edit#slide=id.gf1accd298e_0_673")
ottrpal::include_slide("https://docs.google.com/presentation/d/1nV7x0mIIE4oWVKxpv4qJNvO17y51MajsERGtzR2qClk/edit#slide=id.gf1accd298e_0_673")
```

## It's worth the wait

```{r, fig.alt="session info", out.width = "80%", echo = FALSE, fig.align='center'}
ottrpal::include_slide("https://docs.google.com/presentation/d/1-cauITbscmnDEDt5IqrZOLlCjyhzEOZY5fqwVY7l8tQ/edit#slide=id.gf7bed24491_1_38")
ottrpal::include_slide("https://docs.google.com/presentation/d/1nV7x0mIIE4oWVKxpv4qJNvO17y51MajsERGtzR2qClk/edit#slide=id.gf7bed24491_1_38")
```


## Reproducibility can also be for your future self!

```{r, fig.alt="session info", out.width = "80%", echo = FALSE, fig.align='center'}
ottrpal::include_slide("https://docs.google.com/presentation/d/1-cauITbscmnDEDt5IqrZOLlCjyhzEOZY5fqwVY7l8tQ/edit#slide=id.gf1cd772e00_0_330")
ottrpal::include_slide("https://docs.google.com/presentation/d/1nV7x0mIIE4oWVKxpv4qJNvO17y51MajsERGtzR2qClk/edit#slide=id.gf1cd772e00_0_330")
```

## The process

```{r, fig.alt="session info", out.width = "80%", echo = FALSE, fig.align='center'}
ottrpal::include_slide("https://docs.google.com/presentation/d/1-cauITbscmnDEDt5IqrZOLlCjyhzEOZY5fqwVY7l8tQ/edit#slide=id.g10ab57f2c44_0_221")
ottrpal::include_slide("https://docs.google.com/presentation/d/1nV7x0mIIE4oWVKxpv4qJNvO17y51MajsERGtzR2qClk/edit#slide=id.g10ab57f2c44_0_221")
```

## R Markdown

```{r, fig.alt="session info", out.width = "80%", echo = FALSE, fig.align='center'}
ottrpal::include_slide("https://docs.google.com/presentation/d/1-cauITbscmnDEDt5IqrZOLlCjyhzEOZY5fqwVY7l8tQ/edit#slide=id.g10ab57f2c44_0_0")
ottrpal::include_slide("https://docs.google.com/presentation/d/1nV7x0mIIE4oWVKxpv4qJNvO17y51MajsERGtzR2qClk/edit#slide=id.g10ab57f2c44_0_0")
```

## R Markdown lets you test your work

```{r, fig.alt="session info", out.width = "80%", echo = FALSE, fig.align='center'}
ottrpal::include_slide("https://docs.google.com/presentation/d/1-cauITbscmnDEDt5IqrZOLlCjyhzEOZY5fqwVY7l8tQ/edit#slide=id.gf8f405fdab_0_186")
ottrpal::include_slide("https://docs.google.com/presentation/d/1nV7x0mIIE4oWVKxpv4qJNvO17y51MajsERGtzR2qClk/edit#slide=id.gf8f405fdab_0_186")
```

## R Markdown allows you to more clearly show what you did

```{r, fig.alt="session info", out.width = "80%", echo = FALSE, fig.align='center'}
ottrpal::include_slide("https://docs.google.com/presentation/d/1-cauITbscmnDEDt5IqrZOLlCjyhzEOZY5fqwVY7l8tQ/edit#slide=id.gf8f405fdab_0_102")
ottrpal::include_slide("https://docs.google.com/presentation/d/1nV7x0mIIE4oWVKxpv4qJNvO17y51MajsERGtzR2qClk/edit#slide=id.gf8f405fdab_0_102")
```

## R Markdown makes it easier to update code and see results

```{r, fig.alt="session info", out.width = "80%", echo = FALSE, fig.align='center'}
ottrpal::include_slide("https://docs.google.com/presentation/d/1-cauITbscmnDEDt5IqrZOLlCjyhzEOZY5fqwVY7l8tQ/edit#slide=id.gf9440130d0_0_0")
ottrpal::include_slide("https://docs.google.com/presentation/d/1nV7x0mIIE4oWVKxpv4qJNvO17y51MajsERGtzR2qClk/edit#slide=id.gf9440130d0_0_0")
```


Expand Down Expand Up @@ -177,7 +177,7 @@ knitr::include_graphics("images/markdown_cheatsheet.png")
## Versions matter

```{r, fig.alt="session info", out.width = "80%", echo = FALSE, fig.align='center'}
ottrpal::include_slide("https://docs.google.com/presentation/d/1-cauITbscmnDEDt5IqrZOLlCjyhzEOZY5fqwVY7l8tQ/edit#slide=id.gf62875ddf7_0_404")
ottrpal::include_slide("https://docs.google.com/presentation/d/1nV7x0mIIE4oWVKxpv4qJNvO17y51MajsERGtzR2qClk/edit#slide=id.gf62875ddf7_0_404")
```

## Session info can help
Expand Down

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