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  1. CaImAn CaImAn Public

    Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

    Python 647 368

  2. DeepFRI DeepFRI Public

    Deep functional residue identification

    Python 314 80

  3. finufft finufft Public

    Non-uniform fast Fourier transform library of types 1,2,3 in dimensions 1,2,3

    C++ 312 81

  4. CaImAn-MATLAB CaImAn-MATLAB Public

    Complete Matlab pipeline for large scale calcium imaging data analysis

    MATLAB 253 148

  5. NoRMCorre NoRMCorre Public

    Matlab routines for online non-rigid motion correction of calcium imaging data

    MATLAB 147 91

  6. deepblast deepblast Public

    Neural Networks for Protein Sequence Alignment

    Python 117 21

Repositories

Showing 10 of 186 repositories
  • nixpack Public

    nix+spack = nixpack (spanix?)

    flatironinstitute/nixpack’s past year of commit activity
    Nix 45 MIT 4 1 4 Updated Jan 26, 2025
  • neurorse-workshops Public

    Built workshop materials for the NeuroRSE packages

    flatironinstitute/neurorse-workshops’s past year of commit activity
    HTML 0 MIT 0 0 0 Updated Jan 26, 2025
  • Cryo-EM-Heterogeneity-Challenge-1 Public

    The Inaugural Flatiron Institute Cryo-EM Heterogeneity Community Challenge

    flatironinstitute/Cryo-EM-Heterogeneity-Challenge-1’s past year of commit activity
    Jupyter Notebook 6 MIT 0 17 1 Updated Jan 25, 2025
  • ccn-software-jan-2025 Public

    Materials for CCN software workshop at Flatiron, Jan 2025

    flatironinstitute/ccn-software-jan-2025’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jan 24, 2025
  • PyBenchFramework Public

    BenchmarkToolkit is a Python library designed to simplify and streamline benchmarking tasks. This library provides a high-level abstraction over various benchmarking functions, allowing developers to easily perform performance testing and analysis with minimal setup.

    flatironinstitute/PyBenchFramework’s past year of commit activity
    Python 0 1 0 0 Updated Jan 24, 2025
  • stan-playground Public

    Run Stan models in the browser

    flatironinstitute/stan-playground’s past year of commit activity
    TypeScript 40 Apache-2.0 1 17 4 Updated Jan 24, 2025
  • finufft Public

    Non-uniform fast Fourier transform library of types 1,2,3 in dimensions 1,2,3

    flatironinstitute/finufft’s past year of commit activity
    C++ 312 81 53 (3 issues need help) 10 Updated Jan 24, 2025
  • simple_ans Public

    Simple ANS (Asymmetric Numeral Systems) implementation in Python/C++

    flatironinstitute/simple_ans’s past year of commit activity
    Python 1 Apache-2.0 1 0 0 Updated Jan 24, 2025
  • CaImAn Public

    Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

    flatironinstitute/CaImAn’s past year of commit activity
    Python 647 GPL-2.0 368 78 (1 issue needs help) 10 Updated Jan 24, 2025
  • fmm2d Public

    This codebase is a set of libraries to compute N-body interactions governed by the Laplace and Helmholtz equations, to a specified precision, in two dimensions, on a multi-core shared-memory machine.

    flatironinstitute/fmm2d’s past year of commit activity
    Fortran 24 Apache-2.0 12 6 0 Updated Jan 24, 2025
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