easy_circos v0.4

Release notes

Main change is the addition of minimap2 as an option for big genomes and adding the possibility to customize a few circos limits from the command line.

New parameters:

For minimap2

    --use_minimap2                      Compute links with minimap2. This is only useful for big genomes.
                                        With small genomes probably no align block will be detected.
                                        For minimap2, --minid and --linklen have no effect. By default uses blastn.
    
    --minimap2_method                   Select alignment "method" / "algorithm" for minimap2.
                                        Options: asm5 | asm10 | asm20. [Default: asm20]

For circos plot limits.

# Housekeeping conf

    --max_ticks                         Max number of ticks allowed to plot. [Default: 5000]
    --max_ideograms                     Max number of ideograms allowed to plot. [Default: 200]
    --max_links                         Max number of links allowed to plot. [Default: 50000]
    --max_points_per_track              Max number of points per track (e.g. histogram) allowed to plot. [Default: 50000]