Small fixes to macos and linux workflows #99
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| name: MacOS Build | |
| on: | |
| push: | |
| branches: [ dev, itk_update ] | |
| tags: | |
| - v* | |
| pull_request: | |
| branches: [ dev ] | |
| workflow_dispatch: | |
| jobs: | |
| example_matrix: | |
| strategy: | |
| matrix: | |
| os: [macos-latest, macos-13] | |
| python-version: ["3.8", "3.9", "3.10", "3.11"] | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v4 | |
| - name: Set up python versions ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Checkout submodules | |
| run: | | |
| git submodule init | |
| git submodule update | |
| - name: Build zlib | |
| run: | | |
| git clone https://github.com/madler/zlib.git | |
| mkdir zlib-build | |
| cd zlib-build | |
| cmake ../zlib -DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_PREFIX=../zlib-install | |
| make install | |
| cd .. | |
| - name: Build ITK | |
| run: | | |
| mkdir ITK-build | |
| cd ITK-build | |
| cmake \ | |
| -DBUILD_SHARED_LIBS=OFF \ | |
| -DBUILD_TESTING=OFF \ | |
| -DBUILD_EXAMPLES=OFF \ | |
| -DCMAKE_BUILD_TYPE=Release \ | |
| -DCMAKE_INSTALL_PREFIX=../ITK-install \ | |
| ../ITK | |
| make install | |
| cd .. | |
| - name: Detect if arm and set build variable if yes | |
| if: runner.arch == 'ARM64' || runner.arch == 'ARM64' | |
| run: | | |
| IS_ARM=ON | |
| - name: Build samseg for python version ${{ matrix.python-version }} and test | |
| run: | | |
| # cpython version string representation, e.g., 3.11 -> cp311 | |
| PYTHON_VERSION_STR=$(python -c "import sys; print(f'cp{sys.version_info.major}{sys.version_info.minor}')") | |
| python -m pip install cibuildwheel | |
| python -m cibuildwheel --output-dir ./dist | |
| rm samseg/gems/*.so | |
| env: | |
| CIBW_BUILD: ${PYTHON_VERSION_STR}-* | |
| CIBW_BUILD_FRONTEND: "pip; args: --no-deps" # additional args | |
| MACOSX_DEPLOYMENT_TARGET: "14.0" | |
| ITK_DIR: ITK-install | |
| ZLIB_INCLUDE_DIR: zlib-install/include | |
| ZLIB_LIBRARY: zlib-install/lib/libz.a | |
| APPLE_ARM64: $IS_ARM | |
| - name: Install the wheel and test dependencies | |
| run: | | |
| python -m pip install samseg -f ./dist | |
| python -m pip install pytest | |
| python -m pip install tensorflow | |
| - name: Test the installation | |
| run: | | |
| python -m pytest samseg/tests | |
| - name: Upload artifact | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: macos-wheels | |
| path: dist/*.whl | |
| - name: Upload to PyPI | |
| if: ${{ github.event_name == 'push' && startsWith(github.ref, 'refs/tags') }} | |
| run: | | |
| $PYTHON -m pip install twine | |
| $PYTHON -m twine upload dist/*.whl -u __token__ -p "$PASSWORD" | |
| env: | |
| PASSWORD: ${{ secrets.PYPI_TOKEN }} | |
| PYTHON: /Library/Frameworks/Python.framework/Versions/3.8/bin/python3 |