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Test snake v8 on GH actions
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weber8thomas committed Jun 3, 2024
1 parent 7f3e013 commit e75a59f
Showing 1 changed file with 23 additions and 22 deletions.
45 changes: 23 additions & 22 deletions .github/workflows/main_test.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -7,29 +7,29 @@ on:

jobs:
# WORK
Formatting:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
# Formatting:
# runs-on: ubuntu-latest
# steps:
# - uses: actions/checkout@v4

- name: Formatting
uses: github/super-linter@v4
env:
VALIDATE_ALL_CODEBASE: false
DEFAULT_BRANCH: master
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
VALIDATE_SNAKEMAKE_SNAKEFMT: true
# - name: Formatting
# uses: github/super-linter@v4
# env:
# VALIDATE_ALL_CODEBASE: false
# DEFAULT_BRANCH: master
# GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
# VALIDATE_SNAKEMAKE_SNAKEFMT: true

Linting:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- name: Linting
uses: snakemake/[email protected]
with:
directory: .
snakefile: ./workflow/Snakefile
args: "--lint --config ashleys_pipeline=True"
# Linting:
# runs-on: ubuntu-latest
# steps:
# - uses: actions/checkout@v4
# - name: Linting
# uses: snakemake/[email protected]
# with:
# directory: .
# snakefile: ./workflow/Snakefile
# args: "--lint --config ashleys_pipeline=True"
# Testing_ashleys:
# runs-on: ubuntu-latest
# steps:
Expand All @@ -48,7 +48,8 @@ jobs:
# snakefile: ./workflow/Snakefile
# args: "--cores 1 --use-conda --configfile .tests/config/simple_config.yaml --conda-frontend mamba --default-storage-provider http --report report.zip"
Testing_ashleys_with_custom_python:
runs-on: ubuntu-latest
runs-on: self-hosted
# runs-on: ubuntu-latest
steps:
- name: Checkout repository with submodules
uses: actions/checkout@v3
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