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@@ -7,29 +7,29 @@ on: | |
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jobs: | ||
# WORK | ||
Formatting: | ||
runs-on: ubuntu-latest | ||
steps: | ||
- uses: actions/checkout@v4 | ||
# Formatting: | ||
# runs-on: ubuntu-latest | ||
# steps: | ||
# - uses: actions/checkout@v4 | ||
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||
- name: Formatting | ||
uses: github/super-linter@v4 | ||
env: | ||
VALIDATE_ALL_CODEBASE: false | ||
DEFAULT_BRANCH: master | ||
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | ||
VALIDATE_SNAKEMAKE_SNAKEFMT: true | ||
# - name: Formatting | ||
# uses: github/super-linter@v4 | ||
# env: | ||
# VALIDATE_ALL_CODEBASE: false | ||
# DEFAULT_BRANCH: master | ||
# GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | ||
# VALIDATE_SNAKEMAKE_SNAKEFMT: true | ||
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Linting: | ||
runs-on: ubuntu-latest | ||
steps: | ||
- uses: actions/checkout@v4 | ||
- name: Linting | ||
uses: snakemake/[email protected] | ||
with: | ||
directory: . | ||
snakefile: ./workflow/Snakefile | ||
args: "--lint --config ashleys_pipeline=True" | ||
# Linting: | ||
# runs-on: ubuntu-latest | ||
# steps: | ||
# - uses: actions/checkout@v4 | ||
# - name: Linting | ||
# uses: snakemake/[email protected] | ||
# with: | ||
# directory: . | ||
# snakefile: ./workflow/Snakefile | ||
# args: "--lint --config ashleys_pipeline=True" | ||
# Testing_ashleys: | ||
# runs-on: ubuntu-latest | ||
# steps: | ||
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@@ -48,7 +48,8 @@ jobs: | |
# snakefile: ./workflow/Snakefile | ||
# args: "--cores 1 --use-conda --configfile .tests/config/simple_config.yaml --conda-frontend mamba --default-storage-provider http --report report.zip" | ||
Testing_ashleys_with_custom_python: | ||
runs-on: ubuntu-latest | ||
runs-on: self-hosted | ||
# runs-on: ubuntu-latest | ||
steps: | ||
- name: Checkout repository with submodules | ||
uses: actions/checkout@v3 | ||
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