Testing execution on slurm

friendsofstrandseq · Jun 12, 2024 · e852649 · e852649
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diff --git a/.github/workflows/main_test.yaml b/.github/workflows/main_test.yaml
@@ -130,7 +130,7 @@ jobs:
           mamba install -c conda-forge -c bioconda snakemake snakemake-storage-plugin-http snakemake-executor-plugin-slurm
       - name: Run workflow
         run: |
-          snakemake -j 4 --executor slurm --software-deployment-method conda --conda-frontend mamba --configfile .tests/config/simple_config.yaml -p --snakefile workflow/Snakefile
+          snakemake -j 1 -c 4 --executor slurm --software-deployment-method conda --conda-frontend mamba --configfile .tests/config/simple_config.yaml -p --snakefile workflow/Snakefile
 
   # Testing_ashleys_with_custom_python_singularity:
   #   runs-on: ubuntu-latest

diff --git a/workflow/envs/ashleys_base.yaml b/workflow/envs/ashleys_base.yaml
@@ -17,3 +17,5 @@ dependencies:
   - multiqc
   # Fix sklearn update
   - scikit-learn=1.2.2
+  # Fix ashleys GH issue
+  - python=3.10