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2.3.0 - bypass_ashleys and major history cleaning #46

Merged
merged 21 commits into from
Jun 21, 2024
Merged

2.3.0 - bypass_ashleys and major history cleaning #46

merged 21 commits into from
Jun 21, 2024

Commits on Jun 19, 2024

  1. Dev branch update

    @weber8thomas
    weber8thomas committed Jun 19, 2024
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  2. Fix bypass_ashleys missing parameter + test submodule & LFS on GH act… 

    …ions
    @weber8thomas
    weber8thomas committed Jun 19, 2024
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  3. Fix snakemake storage plugin + update GH actions

    @weber8thomas
    weber8thomas committed Jun 19, 2024
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  4. Test linting with submodules enabled

    @weber8thomas
    weber8thomas committed Jun 19, 2024
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  5. Trying to pull LFS in submodules

    @weber8thomas
    weber8thomas committed Jun 19, 2024
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  6. main_test.yaml typo

    @weber8thomas
    weber8thomas committed Jun 19, 2024
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  7. main_test.yaml test

    @weber8thomas
    weber8thomas committed Jun 19, 2024
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  8. main_test.yaml depends-on typo

    @weber8thomas
    weber8thomas committed Jun 19, 2024
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  9. main_test.yaml depends-on indent fix

    @weber8thomas
    weber8thomas committed Jun 19, 2024
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  10. Updating the different GH actions

    @weber8thomas
    weber8thomas committed Jun 19, 2024
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  11. Updating the different GH actions

    @weber8thomas
    weber8thomas committed Jun 19, 2024
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  12. Updating the different GH actions

    @weber8thomas
    weber8thomas committed Jun 19, 2024
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  13. Updating the different GH actions

    @weber8thomas
    weber8thomas committed Jun 19, 2024
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  14. Set .tests submodule to track main branch

    @weber8thomas
    weber8thomas committed Jun 19, 2024
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  15. Updating the different GH actions

    @weber8thomas
    weber8thomas committed Jun 19, 2024
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  16. Updating the different GH actions

    @weber8thomas
    weber8thomas committed Jun 19, 2024
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  17. Update config

    @weber8thomas
    weber8thomas committed Jun 19, 2024
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  18. Update GH actions to use light reference geneom

    @weber8thomas
    weber8thomas committed Jun 19, 2024
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Commits on Jun 21, 2024

  1. Cleaning docs & switching to snakemake v7

    @weber8thomas
    weber8thomas committed Jun 21, 2024
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  2. Update GH actions to be compliant with smk v7

    @weber8thomas
    weber8thomas committed Jun 21, 2024
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  3. Update GH actions to be compliant with smk v7

    @weber8thomas
    weber8thomas committed Jun 21, 2024
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